UFO05702.5prime Sequence
1123 bp (1001 high quality bases) assembled on 2010-12-10
> UFO05702.5prime
CAGTCGACATGTGGAGCCCACAAAAAGGCCCTACACGACTGTGGGACCTT
AGGTTTAGTAGCTGTATATTTATCTTACACTTAATGTTTAGTTTAGTCAT
AGCTGGTAATGAACTGTGGCCCATGGAACGGCCAGACGGAATGCCCAATA
TCGTCTCACTGGAGGTGATGTGCGGCAAGGATCACATGGATGTACATCTC
ACCTTTTCGCATCCATTCGAGGGCATCGTCAGCTCCAAAGGACAACACAG
CGATCCGCGTTGCGTTTATGTGCCGCCCTCAACGGGCAAGACGTTCTTCT
CCTTCCGCATCTCGTACTCCCGCTGCGGCACCAAGCCGGATCTCAACGGA
CAGTTCTATGAGAATACGGTGGTGGTTCAGTACGACAAGGATCTGCTGGA
AGTCTGGGATGAGGCTAAGCGATTGCGATGCGAGTGGTTCAATGACTACG
AGAAGACCGCCTCCAAGCCACCGATGGTCATTGCCGATCTCGATGTTATC
CAACTGGATTTCCGTGGTGACAATGTGGACTGCTGGATGGAGATTCAGCA
TGGCAAGGGACCCTGGGCGCCGCCTGTTAGTGGAATTGTACCACTCGGCT
CAACTTTAACCCTGGTGGTGGCCATCAATGATTATCGAGGCGAATTCGAT
ATGCGTGTGAAATCCTGCGTGGCCTCCGATGGATCTGGTCATGTGATCAA
CCTGTCCGATGAATTTGGCTGCGTGCTGCGACCCAAGATGATCTCACGCT
TCCTGAAGGCTCGTGCGCCCGACGAGAGGGCCACCGTGATCACCTATGCC
TTCTTCCATGCCTTCAAGTTCCCGGATGCCCTCAGTGTGCACATCAAGTG
CAAGGTGGAGATTTGTCGCCACGGCTGTCTCGATCATTGCCAGAACACGG
GCGTGGCGTGGTGCGCGGATCCGGCGAGAGCCTGGGATTGGTCTCGCTGG
GACTGACCATGCCAATGACGTAGATGTGCACATGTCGATGCTGGGCAGTA
CCACACGATTTTGCTCAGATTTGCACTGCCGCCGGCGTCAACGCATGGCA
TGATGTTCAGATCTGACTCTCTAGAGAACTCATCCCAATCAACACCTGGC
CGGAAGTATGTCACTGGGCGAAT
UFO05702.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| m-RA | 3405 | CG9369-RA | 434..1480 | 7..1035 | 4750 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11767168..11767475 | 638..941 | 1380 | 98.1 | Plus |
| X | 23542271 | X | 11766326..11766481 | 86..241 | 780 | 100 | Plus |
| X | 23542271 | X | 11766750..11766900 | 368..518 | 755 | 100 | Plus |
| X | 23542271 | X | 11766549..11766684 | 237..372 | 680 | 100 | Plus |
| X | 23542271 | X | 11766978..11767102 | 516..640 | 625 | 100 | Plus |
| X | 23542271 | X | 11763202..11763281 | 7..86 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:19:36 has no hits.
UFO05702.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:37 Download gff for
UFO05702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| m-RA | 429..1497 | 1..1052 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:31 Download gff for
UFO05702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| m-RA | 429..1497 | 1..1052 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:24 Download gff for
UFO05702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| m-RA | 429..1497 | 1..1052 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:24 Download gff for
UFO05702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11766751..11766898 | 369..516 | 100 | -> | Plus |
| X | 11766979..11767101 | 517..639 | 100 | -> | Plus |
| X | 11763197..11763281 | 1..86 | 96 | -> | Plus |
| X | 11766327..11766480 | 87..240 | 100 | -> | Plus |
| X | 11766553..11766680 | 241..368 | 100 | -> | Plus |
| X | 11767170..11767600 | 640..1052 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:31 Download gff for
UFO05702.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11660784..11660931 | 369..516 | 100 | -> | Plus |
| arm_X | 11661012..11661134 | 517..639 | 100 | -> | Plus |
| arm_X | 11657230..11657314 | 1..86 | 96 | -> | Plus |
| arm_X | 11660360..11660513 | 87..240 | 100 | -> | Plus |
| arm_X | 11660586..11660713 | 241..368 | 100 | -> | Plus |
| arm_X | 11661203..11661633 | 640..1052 | 93 | | Plus |
