UFO05704.5prime Sequence
1134 bp (1006 high quality bases) assembled on 2009-07-25
> UFO05704.5prime
CAGTCGACATGTTTGCCCAAAACCAAAAGGCCAGCTTCCTGGAGCAGACA
AAGGCGGCGCGGGAGGAGCGGGCACTGGAAAAGCGACGCGAACAGGCGGC
CATCCTGCTGCAGTCCACGCTCAAGGGATATGCGGCGCGTAGGAAGTACC
AGAAACGAATCATACTCGATTTCGATGCCATGTTCACTGAGAATCATGAC
GATAAGGATGCGGAACTGGAACTCGTGGCAAGCAACGTCTATCCGGTGCT
TCGTCGCTACCTCACCCAGATCAGGCTGGACAAGAGCGATGTGCGTGCAC
GGGAGCGTCTGGAGCGCATCTGCCGTTACATCATCAAGGCAATGGAGTCG
GAGAACACCAAGCTATCCTATGCCGCCCTCTGTCTTTTTAAGGAACGCAG
CCTGCCCTGGATCGCGCACATCAAGATACTGCTCACGAACTGCCTGACAT
TGCTGCCGGAGCTGAAGCCGGAAAACCATGCCGACAGCTTGTCCCTTGCC
CTATTTCTGCACACACTGGTAGTCTTCACGGCGCCCAAATCCTGGGCGAT
ACTCAGGAATGCCCAGTTTGAGAAACTGCAGCCGGCCATGCAAAAAATCT
GTTGTAATATTCAAGGTCATCTGGTGCAGCACGATTTTTACAAAATCATG
CGGCTCGTTTTGATACGCGGCACTGTTCGCGAGGAGTTGTCTGTAAAGCC
CGTCACCCTGGTGGCCATCATTACACTTTGCCTTCGTCCCCTGATCGATG
GCAACTTCAGTCGTAATCTACTGGCAAAGTTTCTGTCGGAGATTCTGTCT
GTGCCCGCTTTAATCTACCATCTGCAACAGAGTGTACCTCAGTGCCTGGA
ACAGTTCTCATCGATGGGACTGCTTAAGACGCGCTTAGCATTTCGGGGAC
GTGCAGTGATTCGAGGAGTTCGGCACTAGCATGCCGGGCACCAGTCCCTG
GCTTTTCTGGGAAACAATAGTGAATTTGTTCAATATCGATGGCCAAGGGG
AGTCCAAGAGTTGCCTATCCACTACTGACTGAACCACCCACCATCGCTGT
TGGACTAAATACCACACGGTGAACCACTATAGGGAGTATTTTACTCATGG
CCAGAGCTTAGGATGGCTACTCTCCGTCCGGACT
UFO05704.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5087-RB | 3942 | CG5087-RB | 272..1401 | 9..1132 | 5100 | 97.6 | Plus |
| CG5087-RA | 3945 | CG5087-RA | 272..1401 | 9..1132 | 5100 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8998663..8999152 | 164..653 | 2450 | 100 | Plus |
| 3L | 28110227 | 3L | 8999207..8999597 | 645..1031 | 1600 | 97.4 | Plus |
| 3L | 28110227 | 3L | 8998455..8998609 | 9..163 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:20 has no hits.
UFO05704.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:22 Download gff for
UFO05704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5087-RA | 261..1344 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:58 Download gff for
UFO05704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5087-RA | 263..1346 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:42 Download gff for
UFO05704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5087-RA | 263..1346 | 1..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:42 Download gff for
UFO05704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8998446..8998609 | 1..163 | 97 | -> | Plus |
| 3L | 8998663..8999152 | 164..653 | 100 | -> | Plus |
| 3L | 8999216..8999596 | 654..1030 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:58 Download gff for
UFO05704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8991546..8991709 | 1..163 | 97 | -> | Plus |
| arm_3L | 8991763..8992252 | 164..653 | 100 | -> | Plus |
| arm_3L | 8992316..8992696 | 654..1030 | 97 | -> | Plus |
