UFO05705.5prime Sequence
1116 bp (1015 high quality bases) assembled on 2009-07-25
> UFO05705.5prime
CAGTCGACATGGATGTTTCGGCTCTTTCGGAGACAACTTTTAGTCCTGCG
GAATGGATAAACGCAAACTACAAGAAGTTTGTGGAGGAGAATGGTCGCGA
TGATAGCGAGGCTGCCTCCGCCTTCATCAGGAGTTACGTGGCCAAGTTGC
AGCTGTATATATTCAACGTAAACAATGCTGTGGAGGAGTCAAGTCGCCAA
GTGGTGGCCAGCATGCCAAGGATCGCTAAGGAATCCGCAGCGCTGCAGGC
AGATGTACACCGGCTGCAAGAGAAGATGAGTGCCATGCGATTGGAGGTAG
CTGCAGTGCAAAGCGAAACCGGCGAATGCATGGCCACCTTGGAGCGCTTG
AACACCAAAAGCCAAAAGCTCCAAGTGGCCAAGGAATCGCTACAGGAGTC
TGATGGCTGGGGAAACCTACTAGCTGAACTAGAGGATGGATTTGAACGCA
ATGATCTAAAGGGAGTCTGTGATAAGCTAATAGCCCTGCAAAAGTCCCTG
CACGCCCAGGAACAGCTGCCAGGCCACGCTGAGCGACAGACCCAAGTGGA
GGACTTCAAAAACCGCTTGGAGGCGCTTGCCTCCCCCAGCGTGGTACAGT
GCTTTGCTGAAGGCAATACGGAGCAAGCCCAGCACTTCGTTCAGATCTTC
ACCAGCATTCAGCGGCTGCCACAGCTGCAGCAGTATTACCGAGCTGTGCA
AAAAAATTTTTGGCAGCAGCAATGGAAGCAAACTCTGGAGTTGCAGGGCA
CGGAGTCCCAGCCTCAGCAGCAGCAGTTTCTTACCCTTTACTACGATCAG
CTGCTCGAGCACTGCCAGCGCCAGGTCAAGTGGTGCTCCAACCTTTTCGG
CGAGAACTCCCCGCAGCCCTTCCTGGTTATTGCCGAACTATTGCCGGCAT
TGCAACCCACACGGGATGCCCATATTTGCAGCTTTTGAAGACCTCCAATG
AAAGATTAGAGATGCTGGCCTTGTTCGCCAAGTAATCACAGGTTTGTGCT
GCACTAAACTTCCCTTTCTGGAGCATCGCACAATAACTGGTCGAGGGAAT
GCATCGCCTGACGGGGAGGGCGAATTCCAGGTATTCCAAGCTTATCGACA
GTACCCGCGCCTGAGA
UFO05705.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cog7-RA | 2340 | CG31040-RA | 29..1142 | 8..1113 | 5015 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29931909..29932468 | 1016..460 | 2625 | 98.8 | Minus |
| 3R | 32079331 | 3R | 29932523..29932817 | 462..168 | 1475 | 100 | Minus |
| 3R | 32079331 | 3R | 29932866..29933029 | 171..8 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:50:28 has no hits.
UFO05705.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:31 Download gff for
UFO05705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 23..1029 | 1..1005 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:03 Download gff for
UFO05705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 23..1029 | 1..1005 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:45 Download gff for
UFO05705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 23..1029 | 1..1005 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:45 Download gff for
UFO05705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29931920..29932466 | 462..1005 | 99 | <- | Minus |
| 3R | 29932524..29932817 | 168..461 | 100 | <- | Minus |
| 3R | 29932870..29933032 | 1..167 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:03 Download gff for
UFO05705.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25757642..25758188 | 462..1005 | 99 | <- | Minus |
| arm_3R | 25758246..25758539 | 168..461 | 100 | <- | Minus |
| arm_3R | 25758592..25758754 | 1..167 | 97 | | Minus |
