UFO05707.5prime Sequence
1112 bp (1023 high quality bases) assembled on 2009-07-25
> UFO05707.5prime
CAGTCGACATGATCTTAAGAATACTTCTACTGTCACTGGCGGCGGTGGCG
CACGCGCAGTACCATCAGTTTGGTGAGCAACTCCAGACGGCCCACGGATC
CGACTGTGCACTTCTGTTGGCCGGACCCGGTCGCTCCTCCGTCTACGACT
ACAATGTGAATCTATTTCGCGGCACTTTAAACCCGTACAACAATGGACCG
GGCACTTGCATCACCTACGATGCCATCAATGCGGCCTACTTGGATGCACG
CAAGCGTATTCATGTGGCGCAGCCAAAGTCTGACTGGAAGCCGGAGGAAC
TGGCCACCGTGGGCGAGCTGCTGCTCGACATTTCCATTCAATTGGCCCGA
ACATATGGCTTATCGTATGAAGAAATCGAAAAAGGATTACCTACGATTGA
TACCTCAAAGACGCTGATTCGTGAGGTGTGTCCACCCTTCTTCGCTGGAG
TTGAGTGTCGCCCTGGAAAATATCGCCGTTTCGATGGCCTTTGCAACAAC
ATCGAGCACCCGACATGGGGGGCAGCTAATGCTCCGTTCCAGCGCCTGAT
CGGTCCACTTTACTCGGACGGAATCAATGCTCCCAGAATTTCGGTGACTG
GTCGGGATTTGCCCTTCTCTCGAGTGGTTTCACGCACCATGCATCCCGAC
GACGGTTTCCACGATCACGCGGGCACCGTTATGGTCATCGCCTGGGGTCA
GTTCATGGATCACGACTTCACGCTGACGGGAACGCCGTTGGATCCCATTA
ACCGTAACGATCCCGAGGAGTGCTGCAAGCGACCATTGCATCTAAAGCAT
CCGTACTGCAATGAGATTCGCATTCCCGATGACGATTACTTCTATCGCCT
GTTTAATGTCAAGTGCATTGACTTCGTGCGTGGATTCCCCTCTCCTCGTC
CAGGCTGCAAATTAGCTCCCGTCAGCAGTTCAACACCTTGACTGGTGTCA
TCGATGCGAACACCGTTTACGGAGTGAAGAGTCGTTTGCCGCCAGCTAAG
ACTGGCTACGGAGTCTGATGCGCATGATTCCGGTGTTTCAGGAGTACGGC
CTGAAGACTGCTTCCCTGAAGCTGGAATATCCCGACAGAGGATGCACGCT
CCCAACAAGGCA
UFO05707.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5873-RA | 3081 | CG5873-RA | 443..1552 | 9..1109 | 5175 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17443744..17444132 | 353..741 | 1945 | 100 | Plus |
| 3R | 32079331 | 3R | 17444309..17444483 | 741..915 | 875 | 100 | Plus |
| 3R | 32079331 | 3R | 17435904..17436064 | 18..178 | 805 | 100 | Plus |
| 3R | 32079331 | 3R | 17444583..17444728 | 915..1056 | 470 | 94.5 | Plus |
| 3R | 32079331 | 3R | 17441289..17441379 | 262..352 | 455 | 100 | Plus |
| 3R | 32079331 | 3R | 17440931..17441013 | 179..261 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:26:04 has no hits.
UFO05707.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:33 Download gff for
UFO05707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5873-RA | 432..1551 | 1..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:00 Download gff for
UFO05707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5873-RA | 436..1555 | 1..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:02 Download gff for
UFO05707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5873-RA | 436..1555 | 1..1111 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:02 Download gff for
UFO05707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17435896..17436064 | 12..178 | 98 | -> | Plus |
| 3R | 17440931..17441013 | 179..261 | 100 | -> | Plus |
| 3R | 17441289..17441379 | 262..352 | 100 | -> | Plus |
| 3R | 17443744..17444132 | 353..741 | 100 | -> | Plus |
| 3R | 17444310..17444483 | 742..914 | 99 | -> | Plus |
| 3R | 17444583..17444788 | 915..1111 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:00 Download gff for
UFO05707.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13261618..13261786 | 12..178 | 98 | -> | Plus |
| arm_3R | 13266653..13266735 | 179..261 | 100 | -> | Plus |
| arm_3R | 13267011..13267101 | 262..352 | 100 | -> | Plus |
| arm_3R | 13269466..13269854 | 353..741 | 100 | -> | Plus |
| arm_3R | 13270032..13270205 | 742..914 | 99 | -> | Plus |
| arm_3R | 13270305..13270510 | 915..1111 | 91 | | Plus |
