UFO05709.5prime Sequence
764 bp (63 high quality bases) assembled on 2010-12-10
> UFO05709.5prime
CAATCCACATGGCGGCAATGAGTGCGGATATTGTGCCCATGGAACAAGTG
AGCTCGATGGTCTCCAATGGCGGTGGCAGCGTGGCCATGCAGCGCGATGA
TGAGTACAGGAATCGGATCATGAAAATACATATACTTGATACACTACCAA
ATCATTCTCATGGATTTCTCTATTCAGACAACGAGATCCTTTATTTTGCA
TCACCATGCGGAAAATTGCTAATATTTCTTTCCGTGGCTCTTGTGATAAT
GACTCTACCCTTCAATCTCTTTGATTGCTTTAAGGTGGTGCAGGAATACT
ATCGCGCGGTTATCTTCCGTTTGGGTCGGCTTATGCAGGGCGGTGCCAAG
GGCCCAAGTATCTTCTTCATCCTGCCCTGCATTGACTCCTATGCCCGTGT
GGACTTGCGTACTCGCACATACGATGTGCCACCGCAGGAGGTTCTCACAA
AGGATAGCGTTACGGTTTCGGTGGATGCAATGGTTTACTATCGGGTATCA
AGTGCTACCGTCTCTATCGCGAACGTGGAGAATGCTCACCATTCGACCAG
TCTACTGGCACAAACTACTCTACAAAACACAATGGGAACTCGGCATTTGC
ATGAGATACTCAGCGAGCGTATGACGATTTCCGGCACAATGCATGTTCAA
CTCGACGAAGCCACCGATGCCTGGGGCATCAAAGTTGAACGTGTGTAAAT
CGCGACGTGCGTCTGCCTGTGCAACTGCAACATGCCATGGGCGCTGACGC
AAAATCCGCCCGGG
UFO05709.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42540-RB | 3219 | CG42540-RB | 81..839 | 7..764 | 3125 | 94.2 | Plus |
| CG42540-RI | 3899 | CG42540-RI | 780..1519 | 26..764 | 3030 | 94.1 | Plus |
| CG42540-RK | 3887 | CG42540-RK | 780..1507 | 26..764 | 2870 | 92.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4586578..4586782 | 439..643 | 935 | 97.1 | Plus |
| 3L | 28110227 | 3L | 4563796..4563896 | 26..126 | 505 | 100 | Plus |
| 3L | 28110227 | 3L | 4580077..4580161 | 358..442 | 425 | 100 | Plus |
| 3L | 28110227 | 3L | 4578783..4578871 | 198..286 | 385 | 95.5 | Plus |
| 3L | 28110227 | 3L | 4579445..4579518 | 283..356 | 310 | 94.6 | Plus |
| 3L | 28110227 | 3L | 4588069..4588124 | 645..700 | 265 | 98.2 | Plus |
| 3L | 28110227 | 3L | 4589791..4589851 | 704..764 | 200 | 88.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:19:42 has no hits.
UFO05709.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:39 Download gff for
UFO05709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42540-RB | 77..839 | 1..764 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:36 Download gff for
UFO05709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42540-RB | 77..839 | 1..764 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:28 Download gff for
UFO05709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42540-RB | 77..839 | 1..764 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:28 Download gff for
UFO05709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4578760..4578869 | 175..284 | 86 | -> | Plus |
| 3L | 4579447..4579519 | 285..357 | 93 | -> | Plus |
| 3L | 4580077..4580159 | 358..440 | 100 | -> | Plus |
| 3L | 4586580..4586783 | 441..644 | 96 | -> | Plus |
| 3L | 4588069..4588124 | 645..700 | 98 | -> | Plus |
| 3L | 4563797..4563896 | 27..126 | 100 | -> | Plus |
| 3L | 4577900..4577952 | 127..174 | 79 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:36 Download gff for
UFO05709.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4579447..4579519 | 285..357 | 93 | -> | Plus |
| arm_3L | 4578760..4578869 | 175..284 | 86 | -> | Plus |
| arm_3L | 4580077..4580159 | 358..440 | 100 | -> | Plus |
| arm_3L | 4586580..4586783 | 441..644 | 96 | -> | Plus |
| arm_3L | 4588069..4588124 | 645..700 | 98 | -> | Plus |
| arm_3L | 4563797..4563896 | 27..126 | 100 | -> | Plus |
| arm_3L | 4577900..4577952 | 127..174 | 79 | -> | Plus |
