UFO05710.5prime Sequence
1085 bp (965 high quality bases) assembled on 2010-12-10
> UFO05710.5prime
CAGTCGACATGTGGCTGCGCCAGAGCAGCGGTGGAGGCGTTGCCTCCGTC
GGACACGTCGGCCCACTGCGACAGCGACCCATCGACGCTGCCACAGACTG
CGATCCGCGCGCTTGCTACGACAGCTTCTGTAAGCACTGGCAGCAGGCCT
TCGAGATCATCCAGCACAGTGCACCGCCCTCGCACGACGACGTGCTGGGC
GTGGTCTCGCACTTGGACTACATGGTCACCCTGCTGCTCGTGGAGCTGCA
TCACTGCAACAAAGTCTCGCTGCCGGCGGCCGAGGCTAGTGGTCCGCCTG
CGGCGCCCTGCCTGGAATTCCTGCTCAGCGAGAATCTGCTGGACAAGCTG
TACGAGTGGGCCTGCACCACGGGACGGTATGCCAACGCTGTGAGGCTGGA
GCAGCTGAAGCTGTACGAACTGCTCGTCAGCCACTCGCGCCACCAGCTGC
TCTGCCACGAGCCCTTCCTGCGACCCCTGCTCAAGATACTGGCATCCAGC
CAGGGCGAGATCTTTCCGCCCGATCTCGAGAAGCGCCTGGTGATCCTGCT
GAACCAGCTGTGCGTGGTTCTTATGCAGAATGTCCACCTGCTGGACCTCT
TTTTCTTCTCCGCCCAGACGCAGGTGCAGGAGCAGATATTAAATGGCAAC
GTGGCGCCACCCAAAAGCGGAACCACTACCAACTTCATAATATTTTCGCT
GCTTATCCCGTACGTGCATCGCGAAGGCAGTCTTGGTCACCAAGCGCGCG
ATGCTCTGCTGCTGTGCATGGCGCTTTCGCAGAAGACTCCAACATTGGGA
CGTACATAGCCCAGTACTCCTCGATCTGCCCGCTGTTGGTGACCGGGTCT
GGGGGGGGCTTTACTCGCGTCTGCCCAACAGCATCGAGATTAGCTCCATC
GACTGGCACCGGGATAACGCCAGACGATGGTGAAAGAAGATTCCCGGGAG
CTGACGCTGTTCATGACGCCCCTCAAGTTGGCATGGCGGGGGGTGCCAGG
TGGCCCATGAAGATGATCAAGCACCAGTGGCTGGACATTCATGGTACCAG
GGCCTTTATTGTTTCCGGGGCTTGGAACCTGGCGA
UFO05710.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3558-RD | 4221 | CG3558-RD | 633..1680 | 9..1067 | 4720 | 97.4 | Plus |
| CG3558-RC | 4255 | CG3558-RC | 628..1675 | 9..1067 | 4720 | 97.4 | Plus |
| CG3558-RB | 4160 | CG3558-RB | 596..1643 | 9..1067 | 4720 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2993735..2994408 | 9..682 | 3370 | 100 | Plus |
| 2L | 23513712 | 2L | 2994674..2994918 | 683..929 | 1010 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:18:10 has no hits.
UFO05710.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:22 Download gff for
UFO05710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3558-RC | 596..1666 | 1..1084 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:26:33 Download gff for
UFO05710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3558-RB | 587..1657 | 1..1084 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:55:32 Download gff for
UFO05710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3558-RB | 587..1657 | 1..1084 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:55:32 Download gff for
UFO05710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2993726..2994408 | 1..682 | 99 | -> | Plus |
| 2L | 2994674..2995061 | 683..1084 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:26:33 Download gff for
UFO05710.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2993726..2994408 | 1..682 | 99 | -> | Plus |
| arm_2L | 2994674..2995061 | 683..1084 | 91 | | Plus |
