UFO05716.5prime Sequence
1141 bp (1020 high quality bases) assembled on 2009-07-25
> UFO05716.5prime
CAGTCGACATGATGTCCAAGGTGGCTCATGGCATTGTTTCAAATATGCGG
TCAATACTTCCGAGGCTCGAGGCTTCAGTAAAAGGCGGCCTCGTGTCTGT
TAGAAGTACCAGCAAGAGACCCGAGCTATCCGAGCACTTTACGCTGGATG
AGATGGTGGCCAACGAGAAGCTGCTTCAGTATGACGAGGGCTCAAAGGAA
CGCACGGAACTGGAAACCGCCCTGCTGGGCGTTCTCAATAGGGTAGAGCA
CGTTCCCATCGTTATTAACGGCCAGGAGTTCCAGGCCAAGGAGGACTTCC
AACAGGTTCTGCCCTACGACATCCAACAGCCCATTGCCCATTACGGTCAT
GCCCACCGCGTGCTCATCCAAATGGCCATCGATAAGAGTGTGGAGGCGCA
GGTGAAGTGGGACAAGGTCAGGCTTAGTGATCGAATTGATATTTGGGAGC
GGGCAGCGATGCTAATTGCCGGAAGATACCGCTACAACATCATTGCGGCC
ACGATGTTGGGCCAGGGAAAAACGCTGCGCCAGGCGGAGATGGATGTAGC
CGAGCTGGTGGACTTTATGCGCATTAATCCCGTCTTCCTGCGTGAGCTGG
CCAACTACGAACCCATTAGAGACATCCAAAACAATTGCAGGAACTCCATG
CGGTTGAGAGGACTTTCGGGATTTGTGGCTGCCATCAGTCCGTTTAACTT
TACGGGTATCGCCGCCAATCTGGCCTATACGCCTGCCTTAATGGGCAACT
CGGTGATCTGGAAGCCCTCTGACTCGGCCATCCTGTCCAACTATTTCGTT
TTCAGGCCCTGCGGGAGGCTGGAGTGCCCGATGGTGTGGTGAACTTTGTG
CCCGCCGAGGAGACAACGTTTGCATCCGTAGTGACGCAACATCCGAAATT
GGGCGGGGATTAACTTCACTGGTACCTCAACGGTGCTCAAGGTGCTCTGG
CAACTGGTGGCCCAGAATATAAATTTCTATCAGAACTATTCCCCGGTTTG
GTGGGGCGAAGGGAGGCGGCAGAATTTCCACTTCGTACACTCCCTCCGGC
GAACAGGGAACGGCGGGTGCCTGCACGATAAAAGCTGCTTGAATACGCCG
GCAGAATGCTCCCTCTGGTTCGAGGTTTGTACGTCCGGAAT
UFO05716.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| P5CDh2-RC | 2306 | CG33092-RC | 397..1528 | 9..1141 | 5155 | 97.7 | Plus |
| P5CDh2-RB | 2312 | CG33092-RB | 403..1534 | 9..1141 | 5155 | 97.7 | Plus |
| P5CDh2-RA | 2472 | CG33092-RA | 563..1694 | 9..1141 | 5155 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21878809..21879391 | 88..670 | 2915 | 100 | Plus |
| 3R | 32079331 | 3R | 21879447..21879862 | 669..1088 | 1615 | 95.5 | Plus |
| 3R | 32079331 | 3R | 21878498..21878577 | 9..88 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:25:07 has no hits.
UFO05716.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:35 Download gff for
UFO05716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33092-RC | 397..1500 | 9..1112 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:54 Download gff for
UFO05716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5CDh2-RA | 463..1566 | 9..1112 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:33 Download gff for
UFO05716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5CDh2-RA | 563..1666 | 9..1112 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:33 Download gff for
UFO05716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21878498..21878577 | 9..88 | 100 | -> | Plus |
| 3R | 21878810..21879390 | 89..669 | 100 | -> | Plus |
| 3R | 21879448..21879894 | 670..1116 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:54 Download gff for
UFO05716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17704220..17704299 | 9..88 | 100 | -> | Plus |
| arm_3R | 17704532..17705112 | 89..669 | 100 | -> | Plus |
| arm_3R | 17705170..17705616 | 670..1116 | 95 | -> | Plus |
