UFO05721.5prime Sequence
1100 bp (1004 high quality bases) assembled on 2010-12-10
> UFO05721.5prime
CAGTCGACATGGTATCGCCGCGCAAGCTGGCATCGTCCTACGGCCCAAGA
GTATCCCAATCGGAACCGAACAATCTGATGGCAGCGTCGGCAAAGAGCTG
TGAGAGCCTATTCTCGGCCAGCTCCCGGGAGTCGGCCAGCCTGATCTACC
AGCGCAGCAAGCCGCCACCGCCCCAACAACGTGGCGGCGTGAAGGGTTCC
GGCAGTATGAGCTCCCAGAACCACAGCGAGATCCATCAGCGCGTCATGTC
CGCGAGGAATCTGCGCGCCAAGACCTTCCAGAACCAACTGGCCGATGCCC
AGGCGGAGATTGCCAATCTGGCGCACGAGAATCGCATGCTGCGCACGCTT
CACAATCGCCAGTCATCGGCGCTGAATAAGTACGAGGCCCACAACGCTGA
GCTGCCCAAGTTGCTAAGCTCACATGCCGAGGAGCTGCGCATGTGGCAGA
CCAAGTACCGCAAACTGCAGGCTGCGAACAAGGCTCTGGAGCTAAAGCTC
AAGCAGAAGGAGGAAATCATCCTGACGCTGAGCGATCAGAACAAGCACTA
CAGTCAGCTCAACAAGGATAAGAATCTCGACGAGCGGCAAAAGCTTCAGG
AGAAGTTAAAATCCCTGGAGCAGCGTCTGGAGGAGAAGGACAACGACATG
AAACTGATGGCCCGCAAGGTGCAGCTGGAGTCGAAGAACATCCGCCAGCA
ACTGCTCAACGAGCAAAGGAAGGGCAAGGAGGTGATGCTGAAGCTGGAGA
AGGCCAAGCTGGAGATCAGTGGATACCGCAAGCTGGAGGAGTACACTCTC
GGCACTGACAAGGTGAATCCCCTGTCCTCCGGTCGACGAACCAAACTGAG
TGGCGTCACCGATGAGCCGGACAAGATCGACAGTTGGAGAGTCAATGGAG
ATGCTGGACAAGCCATCGAGAAGACAACCAGAGCGAATTCACGGCCTTGA
CGGATGTGATGGGAGTCGGAATCGTTCTACGATTTCGAAAAGACAGTGCC
GAAGACAAGAGTGGACCCAACCTTCACTAGTCATCACACACACTTGCCGA
CGACCGTAACTTTATCCTCCCGCCGCCACGACATGCTAAATGGACGAAAG
UFO05721.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6652-RA | 2244 | CG6652-RA | 224..1254 | 9..1033 | 4945 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17021997..17022486 | 572..83 | 2450 | 100 | Minus |
| 3L | 28110227 | 3L | 17021700..17021925 | 797..572 | 1130 | 100 | Minus |
| 3L | 28110227 | 3L | 17021419..17021646 | 1021..798 | 845 | 97.4 | Minus |
| 3L | 28110227 | 3L | 17022560..17022633 | 82..9 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:19:58 has no hits.
UFO05721.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:42 Download gff for
UFO05721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6652-RA | 224..1254 | 9..1033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:48 Download gff for
UFO05721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6652-RA | 224..1254 | 9..1033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:36 Download gff for
UFO05721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6652-RA | 224..1254 | 9..1033 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:36 Download gff for
UFO05721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17021998..17022486 | 83..571 | 100 | <- | Minus |
| 3L | 17022560..17022633 | 9..82 | 100 | | Minus |
| 3L | 17021405..17021646 | 798..1033 | 96 | <- | Minus |
| 3L | 17021700..17021925 | 572..797 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:48 Download gff for
UFO05721.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17014505..17014746 | 798..1033 | 96 | <- | Minus |
| arm_3L | 17014800..17015025 | 572..797 | 100 | <- | Minus |
| arm_3L | 17015660..17015733 | 9..82 | 100 | | Minus |
| arm_3L | 17015098..17015586 | 83..571 | 100 | <- | Minus |
