UFO05722.5prime Sequence
1096 bp (1012 high quality bases) assembled on 2010-12-10
> UFO05722.5prime
CAGTCGACATGCTTAAAGGTGTTCCCACGCTAGCCGGTCGAAACCTTCGT
CTCCTGACGACCCAGGCACAGGTGCTGGTCCATCAACGCGCCAAAGCGTC
CGCCGCCGAGCCCGTCGAGGACTTTGACCAGGAGACGGATCTTTTGAAGC
GCGCCAAGTTCGGACACACGGGCAAACAGCTGCAGCAGAAAATAATCAAT
GAGAAAAATCTGCGCGCTCCACCGCTTATGAACTTGGTGTTTGCCAATCG
GAAGTTGTCCTTCTACGATACCAGTTCCACTCCCAAGACCAAAGAGGATA
ATGCCAAGCTCAGTCAGAGACGCCACTATTCGATGCGGCCCCATCGCGAG
CAGGAGCAGCGAAATGCGGAGGATGTGCTATTCGACATGTTCGCCAGCGA
GGAGACGGGCCTCATCTCGATGGGCAAGTTCCTGGCCGGGCTAAAGACCA
CCGGAATTCGCCGGAACGATCCGCGAGTGCGAGAACTGATGGACAACTTG
AAGAAAGTGCACAAGCTAAATAACTACGAGACGGGTTCTTCGGCGGAAAC
TCAGCATCTCAATCGAGAGACCTTCAAGGCTGTGGTTGCCCCCAATATTG
TGCTGATTGCCAAGGCCTTCCGGCAGCAGTTCGTTATTCCCGACTTTACG
AGTTTCGTCAAGGACATCGAGGATATTTACAATCGCTGCAAGACCAACAC
TTTGGGCAAGTTGGCCGACTACATTCCGCAGCTGGCTCGCTATAATCCCG
ATTCCTGGGGCCTGAGCATCTGCACGATTGATGGCCAGCGCTTCTCCATC
GGCGATGTGGATGTGCCCTTCACACTCCAGAGTTGCAGTAAGCCGCTGAC
CTACGCCATTGCCCTGGAGAAACTGGGTCCCAAGGTCGTGCACTCTTATG
TGGGCCAGGAGCCGAGTGCAGAACTTCAACGAACTTGTTTCTGGATCAGA
ACAAAAAAGCCACACCAATCCGATGATCACGCTGGTGCCATTCTGACGTG
CTTCCCTGATGAACGCCTGTCAAGCCGGACATGACCCTCCGCTTGAAATC
TTCGACTACCCATGTCTTGATTGAACGCTGTCGCCGAAGATATTCG
UFO05722.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RD | 2912 | CG42708-RD | 192..1252 | 9..1069 | 5030 | 98.8 | Plus |
| CG42708-RC | 2741 | CG42708-RC | 93..958 | 204..1069 | 4055 | 98.5 | Plus |
| CG42708-RB | 2970 | CG42708-RB | 429..1187 | 311..1069 | 3520 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12672664..12673037 | 953..581 | 1730 | 98.7 | Minus |
| 2R | 25286936 | 2R | 12673100..12673339 | 580..341 | 1200 | 100 | Minus |
| 2R | 25286936 | 2R | 12679208..12679402 | 203..9 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 12676125..12676233 | 310..202 | 545 | 100 | Minus |
| 2R | 25286936 | 2R | 12672473..12672592 | 1069..950 | 225 | 91.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:19:45 has no hits.
UFO05722.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:39 Download gff for
UFO05722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RD | 182..1264 | 3..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:39 Download gff for
UFO05722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RD | 186..1268 | 3..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:30 Download gff for
UFO05722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RD | 186..1268 | 3..1083 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:30 Download gff for
UFO05722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12672664..12673037 | 581..953 | 99 | <- | Minus |
| 2R | 12673100..12673339 | 341..580 | 100 | <- | Minus |
| 2R | 12673899..12673928 | 311..340 | 100 | <- | Minus |
| 2R | 12676125..12676231 | 204..310 | 100 | <- | Minus |
| 2R | 12679208..12679408 | 3..203 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:39 Download gff for
UFO05722.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8560169..8560542 | 581..953 | 99 | <- | Minus |
| arm_2R | 8560605..8560844 | 341..580 | 100 | <- | Minus |
| arm_2R | 8561404..8561433 | 311..340 | 100 | <- | Minus |
| arm_2R | 8563630..8563736 | 204..310 | 100 | <- | Minus |
| arm_2R | 8566713..8566913 | 3..203 | 98 | | Minus |
