UFO05723.5prime Sequence
1099 bp (997 high quality bases) assembled on 2010-12-10
> UFO05723.5prime
CAGTCGACATGTCAGCTCCAGCGGCAGGTGCGGCGTCTGCCGTCCTGGAC
TTTGACGACATCCTGGTCGAGATCGGAGAATTCGGACGCTTTCAGCGGCG
GAACTATCTGCTCATATGCTTGCCCGTACTTTTTGCTGCCGCCAATAGCC
TGTCGTATGTTTTCACGGCAGGATCGCCGACCTATCGATGCTACGTGCCC
GAGTGCGATAAGCTGGTTGATGCGGAATATGGAGCGAATTGGGTGTCGAT
TGCCGTGCCCGGAAGCTGGAGCAAGCGGGGCCATTTTACGCCGTCCACCT
GCGAAAGGTTCGTGGCGAACGGTGACCATCTTGAGTCCTCATCGGATCCT
TGGAGTGCGTGGCCTTTGGATCAGTGCTTTGCTGAGAATTTCACGACGGA
AACGGAGCGATGCAATCAGTTTGTGTACGGCAGTTCGGAACGGACCATTG
TGCAGCAGTGGGGACTACAATGCCCCGAGAATCTCTGGAAGCTGGCATTC
GTGGGCACTATACACTTTGCTGGTCTGGTTGTGGGAACAGCTCTATCCGG
CTACCTCGCCGATCGATATGGACGCAAGCACATTTTCCTCTTCTGCATCG
TGTTCATGGCGTTGACGGGAGTGGCGCAGGCGCTGTCCTGGGACTACATA
AGTTTCCTGTTCTTTGCCTTGCTGAATGCAGTGGGCACTTCCGGTGTCTA
TCCGCTGGCTTTCATCATTGGGGTGGAAATGGTCGGGCCGCGGAAACGCG
AAATGTCCTCCATTGTGCTCAACTACTTCTATGCCGTGGGCGAGGCACTC
CTGGGCCTGTCCGTTTTCCTGCCCGACTGGCGGCAATTGCAACTGGCGCT
CTCTGTACCGCCGCTCATCTGCGTGGCCTACTTTTGGCTGGTACCGGAGT
CCGTCCGGTGGCTGCTGGCTCGTAACCGGCGGGAGCAAGCGGGAGTCATC
ATCCGGCGGGGCCGCAAGGTTACAGGCGAGACATCTCCGTCGAGCTGATG
GCCAGCTTCAAGCAAAGGAGCTTGATGCAACGGCCAAAAGAAAGTATGTC
AGGTGGCCTGCACGTAGAAGATAACAGATCTGTTGCCGTCAGGAGGTGC
UFO05723.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4630-RB | 2074 | CG4630-RB | 215..1318 | 9..1098 | 5050 | 98 | Plus |
| CG4630-RA | 2121 | CG4630-RA | 319..1422 | 9..1098 | 5050 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13217589..13218145 | 565..9 | 2785 | 100 | Minus |
| 2R | 25286936 | 2R | 13217013..13217479 | 1029..565 | 2175 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:19:48 has no hits.
UFO05723.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:40 Download gff for
UFO05723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4630-RA | 312..1403 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:40 Download gff for
UFO05723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4630-RA | 312..1403 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:32 Download gff for
UFO05723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4630-RA | 312..1403 | 1..1082 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:32 Download gff for
UFO05723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13216951..13217478 | 566..1082 | 96 | <- | Minus |
| 2R | 13217589..13218149 | 1..565 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:40 Download gff for
UFO05723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9104456..9104983 | 566..1082 | 96 | <- | Minus |
| arm_2R | 9105094..9105654 | 1..565 | 99 | | Minus |
