UFO05724.5prime Sequence
1105 bp (981 high quality bases) assembled on 2010-12-10
> UFO05724.5prime
CAGTCGACATGTACGCCAGACTGCTGCGAAACTTCGGCGCAAACGCCAGG
TGCTTTGCAACAGAAGCCAGCCCAAAAGTTCGGCCTATCAGCAAGATCCT
TATTTCAAATCGTGGTGAGATCGCATGCAGGGTGATTCGAACCGCACGCA
AGCTGGGAGTTCGTACCGTGGCCGTGTTCTCGGATCCGGACGAGAAGAGC
ATGCACACGCAGTTGGCAGACGAGTCGTACCGCGTGGGGGAAGCTGCCTC
CTCGGCTTCCTATCTTCGCGGTGAACGCATCCTGGACATAGCCAAGCGTT
CGGGCGCCCAGGCCATCCACCCAGGCTACGGCTTCCTCTCCGAGTCCGTC
GAGTTTGCCGAGTTGTGCCAGCGTGAGGGCATCATCTTCATGGGTCCGCC
CAGTTCCGCCATCCGGGACATGGGGATTAAGAGCACCAGCAAGGCCATAA
TGGCCGCTGCTGGGGTGCCGATCATCAATGGATACCATGGCGATGATCAG
TCAGATGAGTGTTTGCAGCGAGAAGCCGACAAAATTGGCTTTCCCTTGAT
GATTAAAGCCGTCCGCGGCGGCGGAGGCAAAGGCATGAGAATCGCAGAAA
AACCGGACGACTTCCTCACCGCTCTGAACTCAGCTCGCACCGAGTCCGAG
AAGTCGTTTGGCGACAGCTCTGTGCTTCTGGAGCGGTACGTCCGATCTCC
ACGCCACGTAGAGGTTCAAGTATTTGCGGATCAGTATGGTGATGCTGTCT
ATCTGTGGGAAAGAGATTGCTCCGTGCAAAGACGTCATCAAAAGATTATT
GAAGAGGCGCCAGCTCCAGGTTTGTCGGAAGATTTGCGTCGTGAGCTGGG
CGAGGCTGCTGTTCGTGCAGCGAAAGCTGTGGCTACGTAGGAGCTGGCAC
CGTGGAGTTCATTCTAGAACAAAGAAGAATCTTCTCTTTCCACTTCATGG
AAATGAATACCCGCCTGCCAGGGGGAGCATCCTATAACGGAAATGAATAC
CGGGCACCGATTTGGTGAATGCGATTCGCATTGGCCGCCGGTGATCATAT
CCTGAAGCAATCTGAGAATACGCGGCGTGCCACGCAATTGAGCTCGCATT
AGCGA
UFO05724.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-RC | 2920 | CG2118-RC | 290..1384 | 9..1100 | 5040 | 98.1 | Plus |
| CG2118-RA | 2387 | CG2118-RA | 111..1205 | 9..1100 | 5040 | 98.1 | Plus |
| CG2118-RB | 2297 | CG2118-RB | 31..1115 | 19..1100 | 4990 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31792705..31793473 | 815..47 | 3845 | 100 | Minus |
| 3R | 32079331 | 3R | 31792386..31792650 | 1079..816 | 695 | 91.5 | Minus |
| 3R | 32079331 | 3R | 31793575..31793618 | 52..9 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:19:52 has no hits.
UFO05724.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:40 Download gff for
UFO05724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RA | 111..1205 | 9..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:43 Download gff for
UFO05724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RA | 111..1205 | 9..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:33 Download gff for
UFO05724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RA | 111..1205 | 9..1100 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:33 Download gff for
UFO05724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31792363..31792650 | 816..1100 | 92 | <- | Minus |
| 3R | 31792705..31793470 | 50..815 | 100 | <- | Minus |
| 3R | 31793578..31793618 | 9..49 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:43 Download gff for
UFO05724.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27618085..27618372 | 816..1100 | 92 | <- | Minus |
| arm_3R | 27618427..27619192 | 50..815 | 100 | <- | Minus |
| arm_3R | 27619300..27619340 | 9..49 | 100 | | Minus |
