UFO05728.5prime Sequence
1137 bp (1040 high quality bases) assembled on 2010-12-10
> UFO05728.5prime
CAGTCGACATGTTGGTGGTTCAGCTAATTGCGGTTTTTTTAAGTCTGGGC
TTGGCTAATGCCCTGCCTGCGGATACGGGGCGCGCCAGTTCGGTGACAAC
TGTCACCATTGTTAGGGGACACGGTTACGAAATCGAGGAGCACGAGGTGC
AGACCTCGGATGGTTACATCCTCACAATGCACCGCATACCGTACTCGAAG
AACACTGGGTACGATGGGCCACGCCCTGTTGTCTTCCTTATGCACGGTCT
GTTGTGTTCCTCCTCGGATTGGGTTCTTGCTGGACCTCACAGTGGGCTGG
CATACCTGCTGTCCGAAGCGGGCTACGATGTGTGGATGGGTAATGCCAGA
GGCAACACCTACTCCAAAAGACACGCCAGCAAGTCGCCGCTGCTGCAGCC
CTTCTGGAATTTTGAGTGGCACGATATCGGAATCTATGATCTGCCCGCTA
TGATGGATTACGTCCTTTACTGGACAAATGTGACTCAACTTACGTATGTG
GGTCACTCTCAAGGAACCACATCCTTTTTTGTGCTCAACTCTATGATTCC
GCGCTTCAAGAGTCGCATTCGATCTGCTCATTTGCTCGCTCCTGTGGCCT
GGATGGAGCATATGGAGAGTCCTTTGGCCACGGTCGGTGGACCACTGCTT
GGTCAGCCCAATGCCTTCGTCGAGCTCTTCGGCAGCGCCGAATTTTTGCC
AAATACACAGCTAATGAACCTGTTCGGGGCTCTCCTCTGCAGCGATGAGG
CCATTTCACAGTTCATGTGCACCAACACCCTATTCCTGCTGGGCGGCTGG
AACTCGCCATATATCAACGAGACCCTGCTCCCAGATATTATGGCCACCAC
TCCGGCGGGATGCTCAGTAATCAGATCTTCCACTACCTGCAGAGTACAAT
TCCGGATACTTCCGGCATTCGACTACGGATCTACGCGCAACAAGAGAGTA
CAGCAGCAGACCCCGCGGAGTACGATGTGAAGGGCATCGATGTGCCCACT
ATTCTCTATTACTCTGACACGACTACTTGCTAGTCTGATGACTGGATCGC
CTTAGGTACATGACCCGAGCGCCTGAAGCGCAATCGCATGCGGAAAAATG
GATCTATCGACTTCTGGACTGAATAAGACTTCTTAGA
UFO05728.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8093-RB | 1555 | CG8093-RB | 87..1188 | 9..1091 | 5015 | 98 | Plus |
| CG8093-RA | 1334 | CG8093-RA | 87..1188 | 9..1091 | 5015 | 98 | Plus |
| Lip3-RA | 1434 | CG8823-RA | 374..508 | 233..367 | 240 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15214468..15215435 | 1058..102 | 4265 | 98.5 | Minus |
| 2R | 25286936 | 2R | 15215506..15215600 | 103..9 | 475 | 100 | Minus |
| 3R | 32079331 | 3R | 13371243..13371377 | 367..233 | 240 | 78.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:20:12 has no hits.
UFO05728.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:44 Download gff for
UFO05728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8093-RA | 87..1171 | 9..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:56 Download gff for
UFO05728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8093-RA | 87..1171 | 9..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:45 Download gff for
UFO05728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8093-RA | 87..1171 | 9..1077 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:45 Download gff for
UFO05728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15214444..15215435 | 102..1077 | 98 | <- | Minus |
| 2R | 15215508..15215600 | 9..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:56 Download gff for
UFO05728.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11103013..11103105 | 9..101 | 100 | | Minus |
| arm_2R | 11101949..11102940 | 102..1077 | 98 | <- | Minus |
