UFO05731.5prime Sequence
1103 bp (999 high quality bases) assembled on 2010-12-10
> UFO05731.5prime
CAGTCGACATGGCAACCTCAGCGATCGGCGGGGCGGGCGTGGGCGTGGCT
GCCTCCGGTCCAGTGCGACGACCCACTGCCAGAGCCACCGCCGGAATCCA
GAGACGCAGGGTGGTCAAGAAGCACATCCAGCAAAAGTATATGCTCTGCG
GCTTCGCCATACACGCTTTCCTGGCCACACCCGCCTATCTGTACGGGAAC
GTGGTGGAGTCCGACAAGGATCTGGTGTTGAGGATATGGCCGGCGATCGT
TTACCAGGCCACAGGCGAGCTCTGCCGCTCGATCATGGAGCACTTGGACA
CAGAGTACAGTGGCAGATCGAGGGAGACGACGCAGTACCGACGGGTCTTC
CTCCTGGCCACGCTCATTGCCTGCGTATCGCTGATGGTCAGCGGGATCCT
GTTCTCCTCCGCCTGGATCGTGGTCACAACCACCACACAGGTGGTAGCTA
TTGTCTTCTACGGATTCTTTGCAGGTATCGGCTCCAGCTTGTACCTGTGG
AAGACGCACGTCATTCTGGAGGCAGTGCGTCCGCGGGAGGACAAGTACGT
CCGCAAGACGATCCACCTGTGCGGCGAGGCCTTCTGCCAGCTGTTCCTCT
CGTTCGTGTTCACCAGCCTGCGCACCTTGTACGGCACCGCCCAGTCCATC
GTACTGATGTCCGCCCTGCTGGTGAACCTCATCCCGCTGAGCCTGATCAT
TACCAAGCATCGCGAGGATGCCTTCACCACGAAGCGGATATCGGTGATCA
AGGCGGAAACGGGATTCGCTGCACTGCCGCTGCGAGCCGCACTGGCGGCC
AACTTGGTGGCGGACCAGCTGGACGGATTGGACACGCTCTCATGGCGGAT
CCGGCCACCACCGAAATGGCCACGCCCAGTGCTGCCGTCGCCGCCGCTGT
GGTGGTGACACGCACAGCAACTACATGCTGGCCACCGATGAGGCGTATGT
GACGTATGTGGATCCCACGGGGTGGAAAATTTAGAAAATATACTCGAGAG
ACAAGACGCGTCCTGGATGTGTGCAGCAAGGGAAATGAAAATTATGCTCG
TGTCCCTCGAAATTGCAAAGTCTGTCTATGTAGTCCTATCTTGTAGCTCA
GAC
UFO05731.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14195-RB | 2696 | CG14195-RB | 725..1695 | 9..976 | 4750 | 99.5 | Plus |
| CG14195-RA | 2123 | CG14195-RA | 152..1122 | 9..976 | 4750 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19209846..19210342 | 967..473 | 2355 | 99.2 | Minus |
| X | 23542271 | X | 19210836..19211148 | 477..165 | 1565 | 100 | Minus |
| X | 23542271 | X | 19211202..19211358 | 165..9 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:20:15 has no hits.
UFO05731.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:45 Download gff for
UFO05731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14195-RA | 145..1126 | 1..981 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:58 Download gff for
UFO05731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14195-RA | 145..1126 | 1..981 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:46 Download gff for
UFO05731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14195-RA | 145..1126 | 1..981 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:46 Download gff for
UFO05731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19209846..19210340 | 475..967 | 99 | <- | Minus |
| X | 19210839..19211148 | 165..474 | 100 | <- | Minus |
| X | 19211203..19211365 | 1..164 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:58 Download gff for
UFO05731.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19103879..19104373 | 475..967 | 99 | <- | Minus |
| arm_X | 19104872..19105181 | 165..474 | 100 | <- | Minus |
| arm_X | 19105236..19105398 | 1..164 | 98 | | Minus |
