UFO05734.5prime Sequence
1109 bp (994 high quality bases) assembled on 2009-07-25
> UFO05734.5prime
CAGTCGACATGTCCAACGCGGATAAGATGCAGGACCAGGAGCACGACGAC
GAGCAGTCCTCCGACATAGAGGGATCCGGCGACAATGTGGGCCGTGATGA
CGGCACCGACGATGACGACGACAGCAACGGCAACATGCAGCAGGAGAATG
GAGATGGCGGCAACGGTGGCGACGGCCAGGAGCACTCTGGCGACGAGGAG
CAACACCACAGCCAGGACAACGAGGGCAACGATAACTCCGCAGGCCAACA
GCAGCAAATGCAGCAAGTGGACCGAACCAGCGCCACCAATCTGATCATCA
ATTACTTGCCACAGGACATGACCGACCGCGAACTGTACAACCTCTTTAGC
GGCTGCGGGCCCATCAACACCTGCAAGATAATGCGCGACTTCAAGACCGG
ATATAGCTTCGGCTACGGCTTCGTGGACTACAAAACGGAGTCGGACTCGG
AGGACGCCATCCAGAAGCTAAATGGCTTCTATGTGCGCAACAAGCGATTA
AAGGTGTCGTATGCTCGACCGGGTGGGCAGTCCATTAAGGATACGAATTT
GTACGTCATCAACCTGTCGCGAAACATCAACGACGACATGCTCGACCGCA
TCTTCTCGCCCTATGGCCTGATTGTTCAGCGAAACATCCTGCGGGATAAG
CTCACTGGACGACCGCGCGGCGTTGCTTTTGTGCGTTACAATAAGCGCGA
GGAAGCTCAAGAGGCGATCAAGGCGCTGAACAACACGGTGCCGGAGGGCG
GATCCCAGCCAATCTGGGTACGACTCGCCGAGGAACACGGCAAGGCCAAG
GCGGCCCAGTTTATGGCCCAGATCGGAGTGGCAATGGTGGCGGAGGCGGT
GGTCCGCCCCACATGGGCCCAGGTGGACCGATGCACCCACCTCATCACAC
AATAATCACCATCACAACAACCACCACAATTCCGCATTATGGCGGCCGCA
TCATCATCAGCGCAGCATCCACACCAAGCATTCCGCAGGCAGCATTCGCA
GCTGCACCAAATGGCAGCACCACCATTCCTACAACACAACAACAATCCCC
CCAACACACCCTCTACACCAACACAACAACCACCCCACATGGGCGTCCGC
ATCGCACCA
UFO05734.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssx-RE | 3635 | CG3056-RE | 161..1267 | 8..1109 | 4940 | 97.3 | Plus |
| ssx-RD | 2945 | CG3056-RD | 161..1267 | 8..1109 | 4940 | 97.3 | Plus |
| ssx-RB | 3055 | CG3056-RB | 161..1267 | 8..1109 | 4940 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1371449..1371774 | 70..395 | 1630 | 100 | Plus |
| X | 23542271 | X | 1372460..1372828 | 685..1056 | 1230 | 94.7 | Plus |
| X | 23542271 | X | 1372084..1372267 | 502..685 | 920 | 100 | Plus |
| X | 23542271 | X | 1371913..1372025 | 394..506 | 565 | 100 | Plus |
| X | 23542271 | X | 1371307..1371371 | 8..72 | 325 | 100 | Plus |
| X | 23542271 | X | 7084674..7084818 | 831..687 | 215 | 76.6 | Minus |
| X | 23542271 | X | 7085624..7085730 | 390..284 | 205 | 79.4 | Minus |
Blast to na_te.dros performed 2014-11-28 20:26:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 550..617 | 75..142 | 142 | 67.6 | Plus |
UFO05734.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:37 Download gff for
UFO05734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3056-RB | 167..1280 | 1..1108 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:04 Download gff for
UFO05734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssx-RB | 153..1266 | 1..1108 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:09 Download gff for
UFO05734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssx-RB | 153..1266 | 1..1108 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:09 Download gff for
UFO05734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1371299..1371370 | 1..71 | 94 | -> | Plus |
| X | 1371451..1371774 | 72..395 | 100 | -> | Plus |
| X | 1371915..1372022 | 396..503 | 100 | -> | Plus |
| X | 1372086..1372267 | 504..685 | 100 | -> | Plus |
| X | 1372461..1372888 | 686..1108 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:04 Download gff for
UFO05734.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1265332..1265403 | 1..71 | 94 | -> | Plus |
| arm_X | 1265484..1265807 | 72..395 | 100 | -> | Plus |
| arm_X | 1265948..1266055 | 396..503 | 100 | -> | Plus |
| arm_X | 1266119..1266300 | 504..685 | 100 | -> | Plus |
| arm_X | 1266494..1266921 | 686..1108 | 93 | | Plus |
