UFO05736.5prime Sequence
1102 bp (1000 high quality bases) assembled on 2010-12-10
> UFO05736.5prime
CAGTCGACATGTTAGGGAAAATGTCGCGGAACGTGACGCTCTCGGATGAA
CAAAGTCGGCTTAATGCGCGTCTGGAGGCGCACATGGTTTACATATGTCC
GGAATGCGGCAAGGCGTTCCGCACTCAGGCGGAGTGGCGACAGCATCTGA
ACACGAAACACGACTATCTAAAGAAGACGTACTCAGATTTCAACTTCATC
CAGATCGACCAGCGATTCCATGAGTGCCAGCTGTGCTTCAAATGGGTGGA
GAATGCCCACAAGACAATCGCCCTCCTGCAGTACCACTACTTTATGCATC
TGGAGCACAGTGAAACCTACCGCTGCGTGCACTGCCGCATGGCGTACACG
AGGCGCCGGGCTCTGAACGTCCACCTACTGGACACGCACATGCGGGAGAT
CGAGAAGTACGAGAACAAGCTGCGCCAGATGAAGCGGCAGCAGGCGAAAC
CCACTACAGCGGCCGCACCAGCTGGAAATGCAGAGAAGCCGATGGCTGTG
AAGCCGCGTGGGCGTCCCAAAGGTTCCACGAACAGAAAGCAAAATGATCT
GCTGCAAAAGGCGCTGATGGACATTGATCTGAACACAGAAATGGAAAAGT
CCCCAGTGACAGCACTAGCGGCTCCTGTAAACGAACCTAAGCCCATTTCA
AATGTCAGCGAGCTGAATCTAGATCGGTGTTTGAATGCCTACGAGGACAT
CGTGCGCAAGGAGGAGAAAGAGGTGGTGCCGAAGTATGACGACGAGTTGG
ATGCGCTCTGCAAGGAGTTTTTTGATGATGGCCCCTCCGCCGGCAAAGGA
GAAGCTAATGAGGAGCAGCAGCAAGACGATGCGCACCTGCAGCAAGGAAA
TCAGGAGGTGGTCATCATCGAGATCGATGCACTCGGCAAGGAGGAGTGGC
CCAGCTGAGAAGGAAATGAAGTCGGACCCATAAGTCAACCGACTAAGCGT
CGACGCATCTTCTACGACGCCCAGCGCGACTCAGAACCGGAAATGTCCAC
CAACGGCCTCACGAAGCCTCAATCGTACCTGGGTCCGAGTGGCGCAGAAA
TCGCCTGATAGGACGGTTGGCGGGCCACCGTATTCAGGAGCACGCAACTT
CG
UFO05736.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1024-RB | 1870 | CG1024-RB | 165..1257 | 9..1094 | 5000 | 97.9 | Plus |
| CG1024-RE | 2506 | CG1024-RE | 44..1136 | 9..1094 | 5000 | 97.9 | Plus |
| CG1024-RD | 2570 | CG1024-RD | 44..1136 | 9..1094 | 5000 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6379018..6379955 | 1086..155 | 4065 | 97 | Minus |
| 3R | 32079331 | 3R | 6380018..6380164 | 155..9 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:20:01 has no hits.
UFO05736.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:42 Download gff for
UFO05736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RB | 165..1257 | 9..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:50 Download gff for
UFO05736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RD | 44..1136 | 9..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:38 Download gff for
UFO05736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RD | 44..1136 | 9..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:38 Download gff for
UFO05736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6379009..6379954 | 156..1094 | 97 | <- | Minus |
| 3R | 6380018..6380164 | 9..155 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:50 Download gff for
UFO05736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2204731..2205676 | 156..1094 | 97 | <- | Minus |
| arm_3R | 2205740..2205886 | 9..155 | 100 | | Minus |
