UFO05737.5prime Sequence
1115 bp (1020 high quality bases) assembled on 2010-12-10
> UFO05737.5prime
CAGTCGACATGACTGAGCAGAGTATTATCGGGGCGCGGGCCTCTGTGATG
GTGTACGATGACAACCAGAAGAAGTGGGTGCCATCGGGCAGCTCGTCGGG
ATTGAGCAAGGTGCAGATCTACCACCACCAGCAGAACAACACGTTCCGTG
TGGTGGGACGAAAGCTGCAGGATCACGAGGTGGTCATCAACTGCTCCATT
CTGAAGGGACTGAAGTACAATCAGGCCACGGCAACATTTCATCAGTGGCG
CGATTCGAAATTCGTTTACGGCTTGAACTTCTCGAGCCAAAATGATGCGG
AGAACTTTGCTAGGGCCATGATGCATGCCCTGGAAGTGCTCAGTGGTCGC
GTGGCGAACAACCCAGGTGGACCGCCCACAAATGGCAATGGCTATGAGGA
GGACATGGGCTATCGCACGATGACCAGCGAGGATGCAGCCATACTGCGTC
AGAACAACAGCATAGGTGGGCACGTCACGCCCTCGGCCCAGACGCCCACC
TCGCAGACCAACCAGAATAACATCCCCCAGAGCCCGCCGACGCCCCAGGG
TCATCATCGCACCAGCAGGAATTCCCTCAGCGCCCCACCGGCACCACAGC
CCCAACAGCAGCAGCAGCAGCAGCAGGCGCAGCAAATGGGTCAGCCAGGA
TCCCACTATGGACCCACTGGAAATGGACCCACTTCGAATGGCCTGCCACA
GCAGGTGAACTCACAGATTCCGCCGGCACCGCAGCAGCAGCCACAACAGC
AACAGTTTCAGCAGCAGCAGCAGCAACAGCAATATCAGCAAATGGTCCAG
GCGGGCTATGCGCCCTCTCAGTATCAGCAACCCCACTACGTGCTCTCCAA
TTCTAATCCCAATCTAACTGTGCACCAATACCCGACACAGCAGGCGCAGC
AGCAGCCACCGCAAGCGCCACAGCCGCCGCCTCCAGACGGTGGATGTACA
TGGTGGGTCATGTCATCTACCGAGCTCGCGAGCGCCAACAGTGTGTGTAC
GCCAGCAGCAGCAGATGCTCCCGCAGCGCATCACAGGCACCTCAGCGCGA
CGATGCAGTCTGGCTACGTGTTCCACAGTACCTCCGGCCCAGACACAGCC
AGAATCGGTACGATC
UFO05737.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ena-RD | 2878 | CG15112-RD | 406..1503 | 9..1092 | 5050 | 98.3 | Plus |
ena-RB | 3669 | CG15112-RB | 695..1790 | 14..1092 | 4985 | 98 | Plus |
ena-RE | 3446 | CG15112-RE | 482..1570 | 9..1092 | 4820 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19158734..19159057 | 14..337 | 1620 | 100 | Plus |
2R | 25286936 | 2R | 19159781..19160035 | 567..821 | 1275 | 100 | Plus |
2R | 25286936 | 2R | 19159120..19159353 | 336..569 | 1170 | 100 | Plus |
2R | 25286936 | 2R | 19160177..19160410 | 819..1045 | 745 | 94.9 | Plus |
Blast to na_te.dros performed 2014-11-26 17:20:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2543 | 695..938 | 206 | 56.3 | Plus |
UFO05737.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:47 Download gff for
UFO05737.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ena-RD | 393..1458 | 9..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:28:07 Download gff for
UFO05737.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ena-RD | 406..1471 | 9..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:54 Download gff for
UFO05737.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ena-RD | 406..1471 | 9..1063 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:54 Download gff for
UFO05737.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19160180..19160432 | 822..1063 | 94 | | Plus |
2R | 19158734..19159055 | 14..335 | 100 | -> | Plus |
2R | 19159120..19159352 | 336..568 | 100 | -> | Plus |
2R | 19159783..19160035 | 569..821 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:28:07 Download gff for
UFO05737.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15046239..15046560 | 14..335 | 100 | -> | Plus |
arm_2R | 15046625..15046857 | 336..568 | 100 | -> | Plus |
arm_2R | 15047288..15047540 | 569..821 | 100 | -> | Plus |
arm_2R | 15047685..15047937 | 822..1063 | 94 | | Plus |