UFO05741.5prime Sequence
1145 bp (1004 high quality bases) assembled on 2009-07-25
> UFO05741.5prime
CAGTCGACATGCGTGGACGCGGCGGATTCATTCCACGTGGTGGTGGCACC
ACTCGCGGTGGCTACTACAATAATCGCAATTCCAGCAACTACGTTAATAC
TCGCACCCAGGGCAATTACCGACCCAATAATGGCCGCTACGAGAATAACT
ATCACAACAACAACAATCGCTACAACAACCACAACAACAGCGGCGGAGGA
GCAGGAGGCAACAGCCACTACGACAACAGGAGTCGGGACAAGTTCACTCA
CCACAACTCGAGCAGCGGGCGCTACGAGTCCAGCTCCTCGAGCCACAAGC
GCAGCTATGACTCATCTCGCGACCGCAGCGATGATCGCAAACGCCCGCGT
CAAGACGATTACCGTCGCACGTCCTCGTCGAATGATCGCAGCGATCGACC
CTCGTCCTCGTCGCAGAACATTGGCTCCTCGTCATCGAACTATCATCAGC
GGAGCAGCACCGGCGGTGGTGGTAATAACGGCGGGAGCTCGAGCTCCTAC
CGCCCACGCGATGATTCCACCAGCGGCAGCCGGCATCAGCGGGACGGATC
GATGGGTCCTCCGAAGCGGATGATGCGTAGCGTGGCCGGCACCAACTATA
TATCCCGACCCCGTGGCACAATGTCGATGAGGGGCGGCATGATGCGCACC
GGGATGCGGGTGGGGAGGAATGCGCGTTGTGCGCACCAGGGTCAACGAGT
CGAATGACCTGCGCACCATGCGCCGCCAGCTGCTCTATGCACAGCAGAAA
GACCGGGCTCGCCTGCTCAAGATTCAGCAGCTGAAAAGCTCGTTGCGACG
ACAACGCCAGGGCGGGAATTCCAGCGACGATTCCAGCGGCAAAGAGGACA
AGGACGGCGAAGATGCTGAGAAAAGCAAGAGAGAAAGGCAGGACAAGGAC
GCCGATGGAGGCGATGATCCGACGACGACGATGACGATGAGAGACGATGA
TGAGAGGACGAGAGAGCAGAGACTTCGCCTGGTAAAAACGCAACAGTCGG
CCACCACGAGGACAGAGTGAGGCGAGTTACGATGATGACGACGATGATGA
TGATGAGCACGTGATGGGCGATGACATGATGACAGGACTAATGATCGATC
CAAGACGCCTAGGCGATGACCCTCGATGACAGGAGTGCAGGGTAG
UFO05741.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8108-RA | 3160 | CG8108-RA | 206..1354 | 9..1130 | 4945 | 97 | Plus |
| CG8108-RB | 3138 | CG8108-RB | 184..1332 | 9..1130 | 4945 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9867305..9867744 | 348..788 | 2125 | 99.3 | Plus |
| 3L | 28110227 | 3L | 9865099..9865399 | 9..309 | 1505 | 100 | Plus |
| 3L | 28110227 | 3L | 9868252..9868543 | 787..1061 | 680 | 91.8 | Plus |
| 3L | 28110227 | 3L | 9866310..9866362 | 305..357 | 250 | 98.1 | Plus |
Blast to na_te.dros performed 2014-11-28 19:49:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2884 | 85..228 | 156 | 59.7 | Plus |
| invader2 | 5124 | invader2 INVADER2 5124bp | 634..781 | 746..887 | 132 | 57.7 | Plus |
UFO05741.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:38 Download gff for
UFO05741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8108-RA | 239..1344 | 9..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:41 Download gff for
UFO05741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8108-RB | 184..1289 | 9..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:18 Download gff for
UFO05741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8108-RB | 184..1289 | 9..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:18 Download gff for
UFO05741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9867314..9867744 | 357..788 | 99 | -> | Plus |
| 3L | 9868254..9868580 | 789..1094 | 92 | | Plus |
| 3L | 9865099..9865398 | 9..308 | 100 | -> | Plus |
| 3L | 9866314..9866361 | 309..356 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:41 Download gff for
UFO05741.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9858199..9858498 | 9..308 | 100 | -> | Plus |
| arm_3L | 9859414..9859461 | 309..356 | 100 | -> | Plus |
| arm_3L | 9860414..9860844 | 357..788 | 99 | -> | Plus |
| arm_3L | 9861354..9861680 | 789..1094 | 92 | | Plus |
