UFO05742.5prime Sequence
1136 bp (1025 high quality bases) assembled on 2010-12-10
> UFO05742.5prime
CAGTCGACATGTCGTTACCGGCTGAAGAGGAGGATTTGGCGGACACTGTC
GCCAAGTACGATTCCATCGAATTGAAGAGCATACAGGACCTGGAAACCTG
CGAGCAGCAACAACTACTGCAGTACGTCGAAAAGCTGCACGGGATTATCC
GCAAATACGACACCAAACTGGCGTCCTATAAACAAAAACTCCTACACTAC
GTAAGCCGGGAAGAAAAGGTTTCGTGTGACAAAGCCAGCCAAGCAACTGA
ATCGGAATTACAAGAATGCCAGTATTCCATGGAAAACGATGAGGATACTA
ACAAAAAAGACCAGCCCAACGATTTATCGGCGACGGACGCCTTCAGTTTT
GTGGACGAAATGAGGCAGGCAGCCAAGCACGCCGAAAACCTGAACAACTT
CGTTTACGAGCACACCTCTGGCATGTACTACGATCCCAAGACGGGATACT
ACTATAACGCGGAGTACGGGCTGTACTACGATGGTAACAACGGCTGCTAC
TACAGCTATGATCACGCCAAAGACTCGTACGAGTTCCACTCTCAGGCCCA
GGTACAGGCGAACGATGCGGCCAAACCGGAATCGGAGGACGAGGATTTGG
AGGTGCAGTTCGATGAGCTGGGAGGCGTCATTACGGACCACGAAACGCTG
AAGAAGATTAAGGCCGAGAAGCAAAAGGCCAAAGATCAAGCTGAAAAATC
CAAGCGCAAAGCCAAGAAAAAGAAGAGTAAAAAGCACAGCAAGAAGAGAT
CCAAGAAGGAGCGCCGTCACAAGTCCAAGAAGCGTCACAGGCATTCTGAT
GATGAGCGGTCTAATGATGCCGAGGAGGGCGAGCTGTCGCAAAGCAGCGA
CTCCAGTTCCGACTCTAGCAACGAGGATAGCAGCAGCAACACGGAAGACA
GCAGTGTTCCAGTTTTCAAGGCTGCCGGACGCTTTCAGACATTGCTAAAA
GTATCCACCCTCCCTCCGCATCATTGTCCAGGAGACTAACGTAGAGTCGC
TGAAGGTGGGAGCCTGCATCTATCACATACAAGGGGTGATACTCTCTGGG
ACGGGAAGGGCGCTCACGATGTTATTCATTCCCGGACGTGAACGTCAGCA
AGTGCCACTAAAGTTAAGTATGAGAAAACAGTTGGA
UFO05742.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8079-RA | 2156 | CG8079-RA | 84..1209 | 9..1135 | 5270 | 98.3 | Plus |
CG8079-RB | 2218 | CG8079-RB | 84..1203 | 9..1135 | 5170 | 97.8 | Plus |
CG8079-RE | 2096 | CG8079-RE | 86..634 | 9..557 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15222041..15222423 | 555..937 | 1915 | 100 | Plus |
2R | 25286936 | 2R | 15218464..15218657 | 9..202 | 970 | 100 | Plus |
2R | 25286936 | 2R | 15221429..15221566 | 325..462 | 690 | 100 | Plus |
2R | 25286936 | 2R | 15218713..15218836 | 201..324 | 620 | 100 | Plus |
2R | 25286936 | 2R | 15221727..15221824 | 461..558 | 490 | 100 | Plus |
2R | 25286936 | 2R | 15222495..15222664 | 937..1109 | 425 | 92 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:20:32 has no hits.
UFO05742.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:47 Download gff for
UFO05742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8079-RA | 84..1209 | 9..1135 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:28:09 Download gff for
UFO05742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8079-RA | 84..1209 | 9..1135 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:55 Download gff for
UFO05742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8079-RA | 84..1209 | 9..1135 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:55 Download gff for
UFO05742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15221728..15221823 | 462..557 | 100 | -> | Plus |
2R | 15221429..15221565 | 325..461 | 100 | -> | Plus |
2R | 15222044..15222425 | 558..938 | 99 | -> | Plus |
2R | 15222497..15222691 | 939..1135 | 91 | | Plus |
2R | 15218464..15218655 | 9..200 | 100 | -> | Plus |
2R | 15218713..15218836 | 201..324 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:28:09 Download gff for
UFO05742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11108934..11109070 | 325..461 | 100 | -> | Plus |
arm_2R | 11109233..11109328 | 462..557 | 100 | -> | Plus |
arm_2R | 11105969..11106160 | 9..200 | 100 | -> | Plus |
arm_2R | 11106218..11106341 | 201..324 | 100 | -> | Plus |
arm_2R | 11109549..11109930 | 558..938 | 99 | -> | Plus |
arm_2R | 11110002..11110196 | 939..1135 | 91 | | Plus |