Clone UFO05742 Report

Search the DGRC for UFO05742

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:57
Well:42
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG8079-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO05742.5prime Sequence

1136 bp (1025 high quality bases) assembled on 2010-12-10

> UFO05742.5prime
CAGTCGACATGTCGTTACCGGCTGAAGAGGAGGATTTGGCGGACACTGTC
GCCAAGTACGATTCCATCGAATTGAAGAGCATACAGGACCTGGAAACCTG
CGAGCAGCAACAACTACTGCAGTACGTCGAAAAGCTGCACGGGATTATCC
GCAAATACGACACCAAACTGGCGTCCTATAAACAAAAACTCCTACACTAC
GTAAGCCGGGAAGAAAAGGTTTCGTGTGACAAAGCCAGCCAAGCAACTGA
ATCGGAATTACAAGAATGCCAGTATTCCATGGAAAACGATGAGGATACTA
ACAAAAAAGACCAGCCCAACGATTTATCGGCGACGGACGCCTTCAGTTTT
GTGGACGAAATGAGGCAGGCAGCCAAGCACGCCGAAAACCTGAACAACTT
CGTTTACGAGCACACCTCTGGCATGTACTACGATCCCAAGACGGGATACT
ACTATAACGCGGAGTACGGGCTGTACTACGATGGTAACAACGGCTGCTAC
TACAGCTATGATCACGCCAAAGACTCGTACGAGTTCCACTCTCAGGCCCA
GGTACAGGCGAACGATGCGGCCAAACCGGAATCGGAGGACGAGGATTTGG
AGGTGCAGTTCGATGAGCTGGGAGGCGTCATTACGGACCACGAAACGCTG
AAGAAGATTAAGGCCGAGAAGCAAAAGGCCAAAGATCAAGCTGAAAAATC
CAAGCGCAAAGCCAAGAAAAAGAAGAGTAAAAAGCACAGCAAGAAGAGAT
CCAAGAAGGAGCGCCGTCACAAGTCCAAGAAGCGTCACAGGCATTCTGAT
GATGAGCGGTCTAATGATGCCGAGGAGGGCGAGCTGTCGCAAAGCAGCGA
CTCCAGTTCCGACTCTAGCAACGAGGATAGCAGCAGCAACACGGAAGACA
GCAGTGTTCCAGTTTTCAAGGCTGCCGGACGCTTTCAGACATTGCTAAAA
GTATCCACCCTCCCTCCGCATCATTGTCCAGGAGACTAACGTAGAGTCGC
TGAAGGTGGGAGCCTGCATCTATCACATACAAGGGGTGATACTCTCTGGG
ACGGGAAGGGCGCTCACGATGTTATTCATTCCCGGACGTGAACGTCAGCA
AGTGCCACTAAAGTTAAGTATGAGAAAACAGTTGGA

UFO05742.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8079-RA 2156 CG8079-RA 84..1209 9..1135 5270 98.3 Plus
CG8079-RB 2218 CG8079-RB 84..1203 9..1135 5170 97.8 Plus
CG8079-RE 2096 CG8079-RE 86..634 9..557 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15222041..15222423 555..937 1915 100 Plus
2R 25286936 2R 15218464..15218657 9..202 970 100 Plus
2R 25286936 2R 15221429..15221566 325..462 690 100 Plus
2R 25286936 2R 15218713..15218836 201..324 620 100 Plus
2R 25286936 2R 15221727..15221824 461..558 490 100 Plus
2R 25286936 2R 15222495..15222664 937..1109 425 92 Plus
Blast to na_te.dros performed on 2014-11-26 17:20:32 has no hits.

UFO05742.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:47 Download gff for UFO05742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 84..1209 9..1135 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:28:09 Download gff for UFO05742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 84..1209 9..1135 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:55 Download gff for UFO05742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8079-RA 84..1209 9..1135 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:55 Download gff for UFO05742.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15221728..15221823 462..557 100 -> Plus
2R 15221429..15221565 325..461 100 -> Plus
2R 15222044..15222425 558..938 99 -> Plus
2R 15222497..15222691 939..1135 91   Plus
2R 15218464..15218655 9..200 100 -> Plus
2R 15218713..15218836 201..324 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:28:09 Download gff for UFO05742.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11108934..11109070 325..461 100 -> Plus
arm_2R 11109233..11109328 462..557 100 -> Plus
arm_2R 11105969..11106160 9..200 100 -> Plus
arm_2R 11106218..11106341 201..324 100 -> Plus
arm_2R 11109549..11109930 558..938 99 -> Plus
arm_2R 11110002..11110196 939..1135 91   Plus