UFO05745.5prime Sequence
1101 bp (999 high quality bases) assembled on 2010-12-10
> UFO05745.5prime
CAGTCGACATGAAGGAACATATGTCCACCAAGCAGCACGAGCGCAACGAG
AAGAAGAAAAAGAAGCTGGCGGCCCTGGCGAACCTGATGGAGCTCAACGA
TCGCGATCGATTGCACGAGGCAGAGTTGGCCAAAAAACGCGATGCAGAGG
TCGAAGTGGAGGAGAAGTCAACAGCGAAGGCGGAGGACGGGGACGACGGT
TTCATCGTGGTGGGCAGCAAACGCAAGCCGCGAAACCGTCGTCAAAACAA
CGAGCTGGAGGCGGATTCACAGACTGCCCCAGGAACATCAGATCCTGAAG
AGCCGGTGAACAAGAAAATCCGCAATTACGATGCTGGTGGAGATAGCCTG
CCGCTGGAGATTGGCTCGCTATCCGAGGATCAGTACAATCAGTTGTCGGC
AGAGTTGAGGCGTCGCAAACGGGAGCTGGAGAACGTACCGGCCTTGCGAC
TGCGTGAGATGGGTCAGCGCGCCTCCCTGGAGACTCCGCAAGATGCTCGT
ACGCCCATCTTTCTAACCGACATCCAGAACCTGTTGATGTGCGCTCTCAT
TGGCCAGAAGAGCCCCTGCCGTCCGGATCGCTGGTGCAGCGTGGAGAAGT
GGCTCAGTCTGTCGCACAGTGTGGTGGTCATTCTGGAGGGACTATCTCTC
TACCACTATCTGTCTAACGAGACCCAGTTTGAGGCCACCAACAGGATATT
CAGCACGAAGCTGGAGATGATACTTCCACCGCAGGGAGGAGGGCCAGAAG
ATTATCGACGAGATAGCCAAGATTCCTCTCACCAATGCGCAGCACGCAGA
CTGATAGACGAGCACGGCTCCCTGAGTCGGCTGTGGAGCTGACAAAGATC
CAACTTTGTTTGTAAAGACATCTTTCCAATCGAAAGCTCTAAATCTGAGT
CGGATGACATGCATGAGGATGACAGTTCCCACGCACTAAGCTCCTGCTGT
CAGCGCTGCAAATGGGTCGACGAGGCTATCCTATTCCATTGCAAGGGCGA
GCTACACCCCTCGTTTCCTAACTTTAGTTACCAGGATCTGTATGCACGGT
AACATCGCAGTCTTATGTTTCGCGGTTGATTGGTGAAATTGTTCCACACG
A
UFO05745.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8368-RA | 2505 | CG8368-RA | 139..1226 | 9..1089 | 4930 | 97.8 | Plus |
| CG8368-RB | 2821 | CG8368-RB | 455..1542 | 9..1089 | 4930 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6606317..6607078 | 9..771 | 3765 | 99.9 | Plus |
| 3L | 28110227 | 3L | 6607133..6607374 | 770..1007 | 820 | 96.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:20:35 has no hits.
UFO05745.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:48 Download gff for
UFO05745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-RA | 115..1190 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:28:12 Download gff for
UFO05745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-RB | 451..1526 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:56 Download gff for
UFO05745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8368-RB | 451..1526 | 1..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:56 Download gff for
UFO05745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6606313..6607078 | 1..771 | 99 | -> | Plus |
| 3L | 6607135..6607444 | 772..1072 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:28:12 Download gff for
UFO05745.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6599413..6600178 | 1..771 | 99 | -> | Plus |
| arm_3L | 6600235..6600544 | 772..1072 | 93 | | Plus |
