UFO05748.5prime Sequence
1069 bp (926 high quality bases) assembled on 2010-12-10
> UFO05748.5prime
CAGTCGACATGCTCCGTTTTCTAAGCCGTCGCAAGGTGCGCAACAACTAT
GTGGATAATTCGAGAGAGGGCGGCGGGGCAACTAGTTCCGCGGTGGGCGT
GGCTGGGGGTGGTGGTGCCATCACCTCCGGCGGCAGCTCACAAATAAAGC
CACAACGCATCGTGGTCAACAAGAACAAAATCGACTGCCGCGTCATTCTG
CTGGACAACACTGACCTTTCCATCGAATTATCGAAAAAGGCATTGGGCAG
CTTTTTGTACGAACAGGTATTCTACGCACTGGACATCATCGAGAAGGATT
ACTTTGGGCTGCAGTTCATGGATGCCAATCACGTCAAGCACTGGCTAGAT
CCCACCAAGCCCATCAAGAAGCAGGTCAAAATTGGGCCGCCCTACACGTT
CCGGCTGAAGGTGAAGTTTTACTCTTCGGAACCCAATACACTGCGCGAAG
AGCTGACCCGCTACCTGTTCTTCTTGCAACTGAAACAAGATCTTCTCGAG
GGGCGACTCGACTGTCCGGAGGACAAGGCCACCGAACTCTGTGCTTTGGC
ATTGCAGTCTGAACTGGGCGACTATGACAATCAGGAGCATTCCGCCGCCA
CCGTCTCGGAGTTCCGTTTTGTGCCCGAGCAAACGGAGGACCTGGAGATA
GCCATACTAGACGAGTACAAGACGTGCCGTGGTCTCACACCTGCTCAAGC
AGAAACGGCATTCCTGAACAAGGCCAAGTGGCTGGATATGTACAGTGTTG
ACATGCACACGGTGCTCGGAAGGATGGCTGCGAATACCACCTTGGCCCTT
ACGCCCACCGGAATACTTGTTTTCGAACGCGATCAGAAGATCGGCCTGTT
CTTCTGGGCGCAAGATCAGTATGCTGGATCTCAAGAAGAAAAAATTGACC
TCTTATTGTGATCGAGGATGACGACGAGAGAAGAGAGCAAGAACACACCT
TTGTCCTTCTGCTGTACAACGAAAAGGCATGCCACCACCTGGTGGAAGTG
CGCATGAGCACAACACTTTCTTCGGCTTTAGGCGCCGTCAAGCCCCTCCG
CCCGTCAAACTGCTCGATG
UFO05748.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yrt-RD | 4464 | CG9764-RD | 713..1766 | 9..1059 | 4710 | 97 | Plus |
| yrt-RC | 3811 | CG9764-RC | 713..1766 | 9..1059 | 4710 | 97 | Plus |
| yrt-RB | 4249 | CG9764-RB | 713..1766 | 9..1059 | 4710 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13432492..13432933 | 1003..559 | 1740 | 95.3 | Minus |
| 3R | 32079331 | 3R | 13434048..13434272 | 233..9 | 1125 | 100 | Minus |
| 3R | 32079331 | 3R | 13433065..13433241 | 558..382 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 13433307..13433455 | 381..233 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:20:25 has no hits.
UFO05748.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:46 Download gff for
UFO05748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yrt-RC | 704..1770 | 1..1064 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:28:04 Download gff for
UFO05748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yrt-RB | 704..1770 | 1..1064 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:52 Download gff for
UFO05748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yrt-RB | 706..1772 | 1..1064 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:52 Download gff for
UFO05748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13433307..13433454 | 234..381 | 100 | <- | Minus |
| 3R | 13434048..13434279 | 1..233 | 98 | | Minus |
| 3R | 13432424..13432933 | 559..1064 | 93 | <- | Minus |
| 3R | 13433065..13433241 | 382..558 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:28:04 Download gff for
UFO05748.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9259029..9259176 | 234..381 | 100 | <- | Minus |
| arm_3R | 9259770..9260001 | 1..233 | 98 | | Minus |
| arm_3R | 9258146..9258655 | 559..1064 | 93 | <- | Minus |
| arm_3R | 9258787..9258963 | 382..558 | 100 | <- | Minus |
