UFO05749.5prime Sequence
1103 bp (988 high quality bases) assembled on 2009-07-25
> UFO05749.5prime
CAGTCGACATGGAGAGCAGGACCCAAATGAATCAGTCGAACCAGCAACAG
CAGCAGCAGAGGAATCGCCTGCCCTCCTCGCCAAGTCCACCGCTGAGTGT
GGTCAGTCTCACTGGCGGTCCGAATGCCAACACAACCTTGATGGGCCTTG
AGCACGATGCAGTGCCCTCGTCGCAGCTGGGCAGGAACAACAACAACGGA
GGTGGCCACCATCGGAGTCACAGCATTACCAATGCAGCGACCACATCACT
GGCGAATCTTCTGGACGGATTTACAGCGCGCGTCTCCACAGCGGCAGCTG
CTGCGGCGGCCACGGCTACAACCACAGAGGTGGTGGTGGCGGCCGCCTCT
GTGATCACCAACCACCTCAGCTCACCCACCAGCGGCACTCCGCCCCACGG
CCTGGATGTAGATGAGGGCGACGACGAGTGCGACGACTGTGAGGAGGACG
AAGACGATCCGGTGGACAACGATGGACACATTGCCGCCCCCACGCCGAAC
AAAAGCTGGGCCGAGAACAAGCAAGTGGTGCAGGAGATACGCAAGAAGAT
GTGCAACCTGTCCTCCATGGTGCCCACCAATGTGCAGTTCCGCCACTTGT
CAGATGGACGTGCCAGGTGCTACTTCCTCGGCACTCCGCCGCAAAGCTGG
GAGACTACGCTGCTCTTTGCCGACATTAACCTAACGCAGTCGGAGGAGCA
GCAGTTATTGGTGCAGCGACTGGAGGGGATTGCATCTGATGAGTGGAGTC
CCACTATGAATGCAGGATCCCCCACCAGTAGCGGCCACCAGCCAGCGTTT
CTTTTCAATTCCCTGCCCAGGCCTAGACTCCCATGGAGTCCACTATTACA
GCAACCCATTCAAAGTAGTGGGGGCAGCGGAGGCAGTGGATCGGCCAGTC
CCTATGCTCGGGAGTATCAACTACTGCAGAGCGCAACGCTCTCAACTGGG
GCATTACCAGCTACGAGTACACAGCCCTCGGGAAACTGGTATCCCCTGCT
CACGACCTATATCAATGCCTGAACCAGAATACAATTCTGGCTGCTGTTTC
CACGCAGCTACGCACCTGCCCCATGACGCTCTGGATCCGATTGGCCAGAA
CTC
UFO05749.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3744-RF | 4543 | CG3744-RF | 664..1762 | 8..1089 | 5050 | 98.3 | Plus |
| CG3744-RE | 3699 | CG3744-RE | 417..1515 | 8..1089 | 5050 | 98.3 | Plus |
| CG3744-RG | 4476 | CG3744-RG | 882..1695 | 293..1089 | 3625 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24874993..24875526 | 826..293 | 2670 | 100 | Minus |
| 3R | 32079331 | 3R | 24875705..24875991 | 294..8 | 1435 | 100 | Minus |
| 3R | 32079331 | 3R | 24874729..24874936 | 1021..824 | 565 | 93.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:05:05 has no hits.
UFO05749.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:40 Download gff for
UFO05749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3744-RA | 646..1752 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:29 Download gff for
UFO05749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3744-RE | 409..1515 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:16 Download gff for
UFO05749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3744-RE | 409..1515 | 1..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:16 Download gff for
UFO05749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24875706..24875994 | 1..293 | 98 | | Minus |
| 3R | 24874714..24874933 | 827..1035 | 94 | <- | Minus |
| 3R | 24874993..24875525 | 294..826 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:29 Download gff for
UFO05749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20700436..20700655 | 827..1035 | 94 | <- | Minus |
| arm_3R | 20700715..20701247 | 294..826 | 100 | <- | Minus |
| arm_3R | 20701428..20701716 | 1..293 | 98 | | Minus |
