UFO05750.5prime Sequence
1090 bp (978 high quality bases) assembled on 2009-07-25
> UFO05750.5prime
CAGTCGACATGGCGCGTTGGTGGCCAATTTTGAGCGTTGTGTGCCTCTGC
CTTGCTGTTGCACATGGCCAGGACAAGCTGGAGGGCGTTGATGTGGAGGA
GGTGTGCGCCGATCGTCCCGCGGATGAGTACTTCCGCCTGGAGACCGACG
GCGACTGCCGCGAGGTGTACAGATGTACCAAGTCGGGTTTGAAAGAAATT
CAGTGTCCTTCGGGTCTGGCCTTCGACGTGATCAAGCAGACCTGCGACTG
GAAGGCCAAGGTGACCAATTGCGACGAGAAAGAGAAGCCGCGCAAGGCCA
AGCCCATCCTGAAGACGGATGAGCCCATCTGTCCCGAGGGTAAGCTGTCC
TGCGGCGACGGCGAGTGCCTGGACAAGGAGCTCTTCTGCAACGGCAAGTC
CGACTGCAAGGACGAATCCGATGAGAACGCCTGCTCTGTCGATGAGGATC
CCAACCGCGCCCCCGAATGCGATCCGACGCAGTGCGCCCTGCCCGACTGC
TTCTGCTCGGCGGACGGAACCCGCATTCCCGGCGGCATTGAGCCCCAACA
GGTGCCCCAGATGATCACGATCACCTTCAACGGCGCCGTCAACGTGGACA
ACATCGACCTGTACGAGGACATCTTCAACGGACAGCGCCAGAATCCCAAC
GGCTGCTCCATCAAGGGCACCTTCTTCGTGTCCCACAAGTACACCAACTA
CTCGGCGGTGCAGGACCTTCATCGTCGCGGACACGAGATCTCCGTGTTCT
CGCTAACGCACAAGGATGACCCCAACTACTGGACCGGCGGCAGCTACGAC
GACTGGCTGGCCGAGATGGCCGGCTCCCGACTGATCGTGGAGCGCTTCGC
CAACATCACCGACGGCTCCATCATCGGCATGCGGGCGCCCTACCTCCGCG
TGGCGCAACAGCAGTTCGAGATGATGGCCGATCAGTTCTTCGTGTACGAC
GCTCATCACGCCTCCCTGAGCGTGCCCATTTACATACACCCTGTACTCGC
ATGCCGCACAGTGCACCGCACGCGCCCACTGCCATCGAGACACCCGTGTG
GAAATGTCATGACGACCTGGAACGACGACATCCACCTCGC
UFO05750.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| verm-RG | 2165 | CG8756-RG | 114..1163 | 8..1039 | 4770 | 97.9 | Plus |
| verm-RI | 2255 | CG8756-RI | 478..1253 | 282..1039 | 3400 | 97.2 | Plus |
| verm-RH | 2183 | CG8756-RH | 406..1181 | 282..1039 | 3400 | 97.2 | Plus |
| verm-RI | 2255 | CG8756-RI | 239..350 | 61..172 | 560 | 100 | Plus |
| verm-RI | 2255 | CG8756-RI | 114..166 | 8..60 | 265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19691137..19691656 | 952..436 | 2470 | 99.2 | Minus |
| 3L | 28110227 | 3L | 19691809..19691958 | 435..286 | 750 | 100 | Minus |
| 3L | 28110227 | 3L | 19692265..19692379 | 285..171 | 575 | 100 | Minus |
| 3L | 28110227 | 3L | 19692983..19693095 | 172..60 | 565 | 100 | Minus |
| 3L | 28110227 | 3L | 19702222..19702487 | 715..447 | 500 | 79.9 | Minus |
| 3L | 28110227 | 3L | 19694973..19695025 | 60..8 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:05:14 has no hits.
UFO05750.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:41 Download gff for
UFO05750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LCBP1-RD | 71..1115 | 1..1028 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:32 Download gff for
UFO05750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| verm-RG | 109..1153 | 1..1028 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:20 Download gff for
UFO05750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| verm-RG | 106..1150 | 1..1028 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:20 Download gff for
UFO05750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19691048..19691656 | 436..1028 | 96 | <- | Minus |
| 3L | 19691809..19691958 | 286..435 | 100 | <- | Minus |
| 3L | 19692265..19692377 | 173..285 | 100 | <- | Minus |
| 3L | 19692983..19693094 | 61..172 | 100 | <- | Minus |
| 3L | 19694973..19695031 | 1..60 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:32 Download gff for
UFO05750.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19686083..19686194 | 61..172 | 100 | <- | Minus |
| arm_3L | 19685365..19685477 | 173..285 | 100 | <- | Minus |
| arm_3L | 19688073..19688131 | 1..60 | 93 | | Minus |
| arm_3L | 19684148..19684756 | 436..1028 | 96 | <- | Minus |
| arm_3L | 19684909..19685058 | 286..435 | 100 | <- | Minus |
