UFO05751.5prime Sequence
1117 bp (992 high quality bases) assembled on 2010-12-10
> UFO05751.5prime
CAGTCGACATGGACACGTTGAGCGAGGCAGTGGCCAATGGAACCGCGACT
GCGGCCACCAGGACGACCAAGGACATTGTCAAGGAGCGCTTCAAGGAGGA
CGAGACCATAGAATACATATTCGAGGCGTATCAGATCAAAGGACCAGAGT
ACTCCAACCGTCTTCTGGCCCTGGTTTCATCGCAGTCGGGCGGCACGTTT
GCCATCATCGCGTTCTCCTACTTGCGCACTCCATTGTCCTCCGCGAACGA
GCTGATCATCAACAAGGTGTTCGCAATCGACCACAATTTCCAGTTGCGAC
AGGACAGCAAGAGCTCGATCACCACGCAACAGTTTGACCTGTCCACAGCC
GAGGATGGCCCCATCAAGTACTACTACTACGCCACGGAGAGCCACCACTA
CGAGGAGTTTGTGGCCAAGGTGATTTCCTTCAAGAGCACCATGGCGCAGC
ATGATCCCGAGACGGTGCTTAACTTCAGGTGGCTGAATGACTACCGGCAA
ATCGGAGAAGTGAAGCAGGAGCTGAAGAAGCGGGAGAGCGAGTACATTGT
CTACAAGGACATAATCATCTACTGCGCCACTTGGAATGTGAACAACAAGA
CCTGCAGCGACAGCAACAATCCACTGCGAGCCTGGCTGGCTTGCAGTGAG
AAGCCGCCGGATATCTACGCGATTGGACTGCAGGAGCTAGATACTCCCAC
AAAGGCTATGTTGAACTCCACCCAGGTGCAGCCATCGAGAAGCAATGGAT
CGATAAGATGATGGACAGCGTCCACCCTGACGTAGAGTACGAAATCCTGA
TGTCGCACCGCCTGGTGGCCACCATGCTGACGGTCATCGTGCGCAAGCAG
CTGCGGCAGCACATCATACGCTGCCGACCAAAGTCGTGGCCCGCGGCATC
TTCAATACGCTAGGCAACAGGCGTGTCGCCATTAGCCTGCAGCTCACGAG
GGCACATCTGCTTTGTGAACTCCCACCTGGCCGCCCACATGGGCTAGTGG
AGGAGCGAATCAGGACTACACGCTATCGTGGAGGCATACGCTTCGATGAT
GACGACATCATGACCATGATCACTCTTCTCTGGTCGCGCAATTGGAATAC
GGATTCAGGAGAGCCGC
UFO05751.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ocrl-RB | 3619 | CG3573-RB | 709..1795 | 9..1079 | 5030 | 98.4 | Plus |
| Ocrl-RA | 3688 | CG3573-RA | 778..1864 | 9..1079 | 5030 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1924527..1924789 | 303..565 | 1315 | 100 | Plus |
| X | 23542271 | X | 1925103..1925413 | 751..1051 | 1095 | 96.1 | Plus |
| X | 23542271 | X | 1924095..1924285 | 113..303 | 940 | 99.5 | Plus |
| X | 23542271 | X | 1924851..1925036 | 566..750 | 880 | 99.5 | Plus |
| X | 23542271 | X | 1923758..1923865 | 9..116 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:18:18 has no hits.
UFO05751.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:23 Download gff for
UFO05751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3573-RA | 747..1852 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:26:38 Download gff for
UFO05751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ocrl-RA | 771..1876 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:55:36 Download gff for
UFO05751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ocrl-RA | 771..1876 | 1..1093 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:55:36 Download gff for
UFO05751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1924851..1925036 | 566..750 | 99 | -> | Plus |
| X | 1925103..1925421 | 751..1060 | 95 | | Plus |
| X | 1923751..1923865 | 1..116 | 96 | -> | Plus |
| X | 1924099..1924285 | 117..303 | 100 | -> | Plus |
| X | 1924528..1924789 | 304..565 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:26:38 Download gff for
UFO05751.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1818884..1819069 | 566..750 | 99 | -> | Plus |
| arm_X | 1818561..1818822 | 304..565 | 100 | -> | Plus |
| arm_X | 1817784..1817898 | 1..116 | 96 | -> | Plus |
| arm_X | 1818132..1818318 | 117..303 | 100 | -> | Plus |
| arm_X | 1819136..1819454 | 751..1060 | 95 | | Plus |
