UFO05753.5prime Sequence
1137 bp (1037 high quality bases) assembled on 2010-12-10
> UFO05753.5prime
CAGTCGACATGTGGAAGTGCCACAAGTGCGGCAAACCCGTTTACTTCGCG
GAACGTAAACAATCGATCGGCTACGATTGGCATCCGGAATGTTTGCGCTG
CGAGGAATGCGGCAAACGCTTAAATCCCGGCCAGCATGCTGAGCACAAAA
GTGTGCCCTACTGCCATGTGCCCTGCTATGGCGCCCTGTTTGGACCCCAG
TTGTTTGGCCACGGCACCCGGGTGGAATCGCACAAAAGCTATGGGGTGAA
GGGAGCCCAGAAGCCAACCGGAGCTCAGGCCAATGGCCCGCCACTCCCAC
GTGATCACCTGGAGTCCAAACTTAAGGTCTACAACCAATTCTACGACAAC
AAAAGCCTGGAGATACGTAGTCGTGAGGTCAACAACCGGTTGGTGCTGGA
AGGCGCGCTTAGAGTTTACTGGGGCGTGCAGGGAGTGATTCATCTCAAGG
AGGACGATGATCAGCGCATCTTAGTGCGCAAAAGGAACTCTTGCCGTGTG
TCCAAGGCTGCCAATGAAAGCAGTTCGGATAAGGAAAACGAAGCTAGCGA
ATCGCTGGCTCCGCCCACCACCACCACAGCCGAGGTCGATCAACTATCCA
CGGATGTTTCCCTTTCCGAGAGCATGACCTTCGACTCCTGTAGCCTGAAC
GAGATCTCCGAGTTGCCCACAACCCCAGAAGATGCCTCGGCCAACACCAC
AGCCAACAGCAAAGAGCAGACCAATGGTAATGTGTGCAACGACGACGAGG
ATACGACCACGACGGACTCATCTGGAACCCTGGTGGAGGCTCCTACTGCC
AGCACAAGTTGTGTGTCCAGCACATTGCCTTCGAAGTTGGACCGTCTGGA
AAAACTGGATTGGGACGACATAGACGATCTGCTGCAGTAGAGAGACGTCA
CAACGACAAGATCGCATTTATGAAACTATGCCTGTCAAACTGCCGTCGTC
GCATCCTCCAGCGACAGTTCGCCCAGCAAAACATCAAAGAGACCACTACG
ACACTGAATCAGCTCGACTCATCGGCATCACAAACACAGCAGCACGGATG
ATTTTATGAACGCCCGGATCGTGACTGCCAACCCCAATACGCAGAAATAC
AACACCGGTTCTCCTTACTGAACGCTCTCTTGGTTAC
UFO05753.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rassf-RA | 3473 | CG4656-RA | 394..1505 | 9..1109 | 5180 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23116180..23116772 | 1096..516 | 2340 | 97.3 | Minus |
| 3R | 32079331 | 3R | 23116820..23117016 | 521..325 | 970 | 99.5 | Minus |
| 3R | 32079331 | 3R | 23117079..23117265 | 328..142 | 935 | 100 | Minus |
| 3R | 32079331 | 3R | 23117330..23117425 | 143..48 | 480 | 100 | Minus |
| 3R | 32079331 | 3R | 23117499..23117538 | 48..9 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:18:21 has no hits.
UFO05753.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:24 Download gff for
UFO05753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rassf-RA | 410..1537 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:26:40 Download gff for
UFO05753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rassf-RA | 390..1517 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:55:39 Download gff for
UFO05753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rassf-RA | 390..1517 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:55:39 Download gff for
UFO05753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23116156..23116772 | 516..1121 | 96 | <- | Minus |
| 3R | 23116826..23117014 | 327..515 | 100 | <- | Minus |
| 3R | 23117081..23117263 | 144..326 | 100 | <- | Minus |
| 3R | 23117330..23117424 | 49..143 | 100 | <- | Minus |
| 3R | 23117499..23117542 | 1..48 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:26:40 Download gff for
UFO05753.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18941878..18942494 | 516..1121 | 96 | <- | Minus |
| arm_3R | 18942548..18942736 | 327..515 | 100 | <- | Minus |
| arm_3R | 18942803..18942985 | 144..326 | 100 | <- | Minus |
| arm_3R | 18943052..18943146 | 49..143 | 100 | <- | Minus |
| arm_3R | 18943221..18943264 | 1..48 | 91 | | Minus |
