UFO05756.5prime Sequence
1121 bp (966 high quality bases) assembled on 2010-12-10
> UFO05756.5prime
CAGTCGACATGTCCCACTTCACGCATGCCTCCAGCAGCGACCTGGTCAAC
CTCAATGTGGGTGGTCAGCGCTTTTCCACGTCGCGGCAAACGCTTACGTG
GATCCCGGACACCTTCTTCACGGCTCTTCTCAGCGGACGCATCTCGAGTC
TCAGAGACGAGCACAATGCCATCTTTATTGATCGCGATCCGACGCTCTTC
TCGATCATACTTAACTACTTAAGGACCAAGGACATCGACATCAAGAACTG
CGAAATACGCGCTCTGCGCCATGAGGCCGAGTACTATGGCATCACGCCGC
TGACCAAGCGCCTGGCCCTCTGCGAAGACCTTAACCACTCGTCCTGCGGT
GATTTGCTGTTCTACGGATTTCTGGCGGCGCCGCCCATGCCGTCAAACGA
AGCTGTGGCTGCTACTAGCGTTGACGAGTCATTGCCCTCCACTTCGGCCA
GTGCGATTGGCAGTCGTCCTGGGTCCATGGTGCGCGTTCCCGAACCCTCA
CGCTCCTCACACTCGCGCAATTCATCATGGGATCTGCGCCTTGGTCGCAC
AGGTAGCACTGGCAATGGTGCCAATCCCCCAGCTCCCATGTTGCACTCAC
GTAATCCCTCGATTGACTTTATGCGCCACTCTCGGAACTCCTCGGCCGAT
CTGAACAAAGTCTTTCGAAACGAAGTTGGCCTGGTATTCAGTCCCACGCA
GAACTCAAACTGGGTGGACCCGTTGCGAGTGCAAATCATTAAAGCGCACC
AAAATTGGATAGCAGTGGCTTACGCACACTTTGTGACTTGCTACCGGGTG
AAAGACTCCAACGGATGGCAGCAGGTGTTCACATCGCCCCACATCGACGC
CACTATCGAAAAATCCGCCATCAACTCAAAGTTGAATACTTCCGCAGCAG
AAGCCACTGCCCAGCAGGATGGTGGCCATTTTCTTACGGCAGTCAAATAA
GATTGTGGAGCATTCAGGAGGGCGGCCAGAAAAACGAGGTGGGGCCGTTT
AATTAAATGGTGCGAAGTGGAGTACCTGTTCTTTATCGGCAGGTCAGCTG
GTGCCCCTGTCATCTCTCCGCAGATCGCGTCTGGCATGGCATGACGCGAG
CACTGGCAGATCAGGAACTAA
UFO05756.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9467-RA | 3180 | CG9467-RA | 296..1406 | 8..1120 | 5050 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9799553..9800591 | 1111..70 | 4555 | 97.3 | Minus |
| 3R | 32079331 | 3R | 9800669..9800731 | 70..8 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:18:27 has no hits.
UFO05756.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:25 Download gff for
UFO05756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9467-RA | 313..1430 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:26:45 Download gff for
UFO05756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9467-RA | 288..1406 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:55:44 Download gff for
UFO05756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9467-RA | 288..1406 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:55:44 Download gff for
UFO05756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9799542..9800590 | 71..1121 | 97 | <- | Minus |
| 3R | 9800669..9800736 | 1..70 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:26:45 Download gff for
UFO05756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5625264..5626312 | 71..1121 | 97 | <- | Minus |
| arm_3R | 5626391..5626458 | 1..70 | 94 | | Minus |
