Clone UFO05760 Report

Search the DGRC for UFO05760

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:57
Well:60
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptGs2-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO05760.5prime Sequence

1061 bp (961 high quality bases) assembled on 2010-12-10

> UFO05760.5prime
CAGTCGACATGCATTCCGCGATCCTGGAGGACTCGCCCAACGCGCGCATC
AACAAGACGATCCTCGATCGCTATCTTTCACTGCCGCTGCAGGAGAACAT
CGTTCAGGCCACCTACGTGTGGATCGATGGCACCGGCGAGGATTTGCGCT
GCAAGGATCGCACCCTCGACTTCATTCCCCAGAGTCCCAAGGAGCTACCC
GTTTGGAACTACGATGGAAGCTCGTGCTACCAGGCCGAGGGATCCAACTC
GGACACCTACCTGTATCCGGTGGCCATCTACAAGGACCCGTTCCGGCGCG
GCAACAACATCCTGGTGATGTGCGACACCTACAAGTTCGACGGCACCCCC
ACGGACACCAACAAGCGCAAGACCTGCCTGGAGGTGGCCAACAAGTGCGC
CGCAAAGGAGCCCTGGTTCGGTATTGAGCAGGAGTACACCTTCCTCGACT
TTGATGGCCATCCATTGGGCTGGCCCAAGAACGGTTTCCCCGGACCCCAG
GGACCCTACTATTGCGGCGTTGGTGCCAACAAGGTCTACGCCCGCGACAT
TGTGGATGCCCACTATCGCGCCTGTCTGTACGCCGGCATCAAGGTGTCCG
GCACCAATGCCGAGGTGATGCCCGCCCAGTGGGAGTTCCAGGTGGGACCC
TGCGAGGGCATCTCCATTGGTGATGATCTCTGGATGGCCCGTTTCCTCTT
GCATCGCATCTCCGAGGAGTTTGGCATTGTGTCCACTCTGGATCCCAAGC
CGATGCCTGGCGATTGGAACGGTGCTGGTGCCCACACCAATGTGTCGACG
AACGCAATGCGCGAAGATGGCGGCATTCGGGACATTGAGAAGCGGTGGCC
AAGCTGTCCAAGTGCCACGAGAGGCACATTCGCGCCTACGATCCCCAAGC
AAGGACAGGACAATGCCCGTCGTCTGACCGGAAAGCACGAGACGAGCTCC
ATCAACGAATTTCATTGCCGGCGTGGGCCAATCACGGAAGCGAGCATAAC
ACATTCCTTTCCGGGCGTCAATGAATGTATGGGCAAGGGCTAATTTTCTA
AGGATGCCGGT

UFO05760.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
Gs2-RB 1906 CG1743-RB 231..1255 9..1042 4775 98.1 Plus
Gs2-RF 1990 CG1743-RF 326..1339 20..1042 4720 98 Plus
Gs2-RE 1829 CG1743-RE 165..1178 20..1042 4720 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11428528..11428871 192..535 1705 99.7 Plus
X 23542271 X 11429239..11429488 726..976 1065 97.6 Plus
X 23542271 X 11428980..11429173 532..725 970 100 Plus
X 23542271 X 11424282..11424454 20..192 865 100 Plus
2L 23513712 2L 132973..133207 406..640 380 77.4 Plus
Blast to na_te.dros performed on 2014-11-26 17:18:14 has no hits.

UFO05760.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:23 Download gff for UFO05760.5prime
Subject Subject Range Query Range Percent Splice Strand
Gs2-RB 201..1203 1..1008 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:26:36 Download gff for UFO05760.5prime
Subject Subject Range Query Range Percent Splice Strand
Gs2-RB 224..1226 1..1008 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:55:35 Download gff for UFO05760.5prime
Subject Subject Range Query Range Percent Splice Strand
Gs2-RB 224..1226 1..1008 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:55:35 Download gff for UFO05760.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11429239..11429517 726..1008 95   Plus
X 11424282..11424454 20..192 100 -> Plus
X 11428529..11428869 193..533 99 -> Plus
X 11428982..11429173 534..725 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:26:36 Download gff for UFO05760.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11318315..11318487 20..192 100 -> Plus
arm_X 11322562..11322902 193..533 99 -> Plus
arm_X 11323015..11323206 534..725 100 -> Plus
arm_X 11323272..11323550 726..1008 95   Plus