UFO05761.5prime Sequence
1100 bp (1005 high quality bases) assembled on 2010-12-10
> UFO05761.5prime
CAGTCGACATGAACTACAACTACAACAACAGCTACAACTACAACTACATC
TGCAGCACCACCAGCCCCAATAACAACAGAAGCAGAAACAACAAAAGCAG
AGAACAGGACACGCAGCAGCAGCAGCATCAGCAGCAGCATCAGCAGCCAC
ATCAGCAACCAATGCAGGCGGCACTGAGGACGGCGAGCTTTAGCTCCAGC
TCCAGCTCCAACGCCAGCAGCTCCACGTCCACATCCAAGACGAGAGCAGG
AATAACGTCGTTAATCTATTTACCGCCTTTCTGCTATCCATGTAAGCATG
TGCCTGCGGCCGGCACCACGACTCGGAGTCGAAGTCAGACTTTGAGCCCT
GGCAGCGGGAGTTGCCGGGACAGCAGCTGCTGTTGTCCGCCCGGCTGGGA
ACATAAAAATTATGATAAACATGCTTCAGCGGCGACGTTGACACCAGCAA
CGGCGGCAGTAGGAGCAGCAGGAGCAGGAGGAACAACAACTGCAACGGCA
AGCATCATCACCACAACAGGACCCGCAGCGGCAACAATGTCCTCCTCGTG
GTCTGGTGAATTCCTGCTGCCGGGTATTCAGTTACCCGTGGCCGCAGCGG
GGCATAGCTGCACCGATCTCCGGCAGACGTCGCAATTAGTTATGCCCACT
GTTGCTAGCGGGGATGTGGTGGCGGCAGTGGACGCAGAAGGCGGCGTCTT
GGAATGCGGCAAGCGATGCTGGCGACGTGAGCGAATCCGGCGCGAAGGAC
CAAGTCATGCGTCTGCGGCGTCGCTGGCCCAGGTAAATCCAATCAGCACA
AGCAAAAGCACCAGCATCAGCACTAGCCCAGCAACAATAGATGGAGCATC
GGGAGCAGGAGCAGTGGTTACGACACCGCTCACAATTCGCAAACAACGAC
AAAACACGGCAAGGGCACAACTGGTGCTGCATTGCCGCATGATGAAGAGA
ATGAGATGATGATGTAGTGCTTAACTATAACGTGATATTAGTCTGGATCG
GCGGGGCGAGCCGCGAACTTTCAGCATAGTGGCTGATGTTCTTTGGGGCA
GCATCTGCTGCGGGCAACGGAAACAAACCCCCAACTCAATCGCACCCAAA
UFO05761.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16791-RD | 7002 | CG16791-RD | 1107..2213 | 8..1098 | 5030 | 98 | Plus |
| CG16791-RC | 4719 | CG16791-RC | 1107..2213 | 8..1098 | 5030 | 98 | Plus |
| CG16791-RB | 4551 | CG16791-RB | 1107..2213 | 8..1098 | 5030 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21342137..21343052 | 1010..104 | 4150 | 98.9 | Minus |
| 3R | 32079331 | 3R | 21348395..21348495 | 108..8 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:18:37 has no hits.
UFO05761.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:27 Download gff for
UFO05761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16791-RA | 1082..2195 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:26:50 Download gff for
UFO05761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16791-RB | 1099..2212 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:55:50 Download gff for
UFO05761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16791-RB | 1099..2212 | 1..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:55:50 Download gff for
UFO05761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21342043..21343048 | 108..1097 | 97 | <- | Minus |
| 3R | 21348396..21348503 | 1..107 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:26:50 Download gff for
UFO05761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17167765..17168770 | 108..1097 | 97 | <- | Minus |
| arm_3R | 17174118..17174225 | 1..107 | 97 | | Minus |
