UFO05766.5prime Sequence
1081 bp (984 high quality bases) assembled on 2010-12-10
> UFO05766.5prime
CAGTCGACATGTCGTACCACAAGCCCGAAGCTAAGACCGTCCAGGATCTG
AAAGATCTGGCCCAGAAACTGCGAATTCACTCTATCAACGCCACCCAGGC
CTCCAAATCGGGCCATCCCACATCATGTGCCTCGATCGCTGAGATCATGT
CCGTGCTGTTCTTCCAGCAGCTGCGCCTGAACCTGAAGCACCCACGCGAT
CCCTCCAGCGATCGCTTCATCCTGTCCAAAGGACACGCTGCTCCCATTCT
GTATGCCGCCTGGGCTGAGGCTGGTCTCTTCCCCATCGCGGATCTGAACA
ACCTGCGCAAGATCGACAGCGATCTGGAGGGTCACCCGACGCCTCGTCTG
AACTTCATCGATGTGGGCACTGGATCCCTGGGACAGGGTGTCGCCGTCGG
CGCTGGCATGGCCTATGTGGGCAAGAACTTCGACAAGGCCGACTACCGCA
CCTACGTGGTGGTGGGTGATGGTGAGTCCGCCGAGGGTTCCATCTGGGAG
TCGCTGCACTTTGCCGGCCACTATAAACTGGACAACCTTTGCGTGATCTT
TGATGTGAACCGCTTGGGCCAGTCGGAGGCCACCTCCCTGCAGCATAAGC
TGGATGTTTACCGTGATCGTCTGGAGGCCTTCGGCTTTAATGCCGTCGTT
GTCGATGGTCATGATGTCGAGGAATTGAGCAAGGCTTTCCATTGTGCTGC
AATCACCAAGAACAAGCCCACCGCCATCATTGCAAAGACGTTCAAGGGCA
GGGACTTCCCCAACATCGAGGATTTGGACAACTGGCACGGCAAGCCACTG
GGCGACAAGGCCGCCGAAGTGTGAGCATCTGGAGGGACTGATTGTCAACA
GAACGTCAAGCTGACCCCTAGCCGTGCCCAGACTGGTGCTGCTCCCGACG
TGACATCAACACATTAAGTTGAGCTCGCCACCCGCCTACAGCTGGGTGAT
CCATTGCCACCCGTTTGGCTATGGACAGCTCCTGGCCAGATGGCAGACAC
CTGCGTGTGTTGCCCTAGACGAAACCAGACTCAACTTCCTCGACAAGCTG
AGAACCCCGACCCGACGCCCAATGAATGCTT
UFO05766.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8036-RC | 2235 | CG8036-RC | 208..1287 | 9..1064 | 4730 | 97.3 | Plus |
| CG8036-RB | 2493 | CG8036-RB | 466..1545 | 9..1064 | 4730 | 97.3 | Plus |
| CG8036-RD | 2179 | CG8036-RD | 256..1231 | 113..1064 | 4210 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8671710..8672577 | 112..969 | 3850 | 98.4 | Plus |
| 3L | 28110227 | 3L | 18293677..18294199 | 560..38 | 1010 | 79.5 | Minus |
| 3R | 32079331 | 3R | 8669825..8669928 | 9..112 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:18:48 has no hits.
UFO05766.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:29 Download gff for
UFO05766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RC | 194..1223 | 9..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:26:58 Download gff for
UFO05766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RB | 466..1495 | 9..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:55:56 Download gff for
UFO05766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8036-RB | 466..1495 | 9..1021 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:55:56 Download gff for
UFO05766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8669825..8669928 | 9..112 | 100 | -> | Plus |
| 3R | 8671711..8672636 | 113..1021 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:26:58 Download gff for
UFO05766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4495547..4495650 | 9..112 | 100 | -> | Plus |
| arm_3R | 4497433..4498358 | 113..1021 | 97 | | Plus |
