UFO05778.5prime Sequence
893 bp (892 high quality bases) assembled on 2010-12-10
> UFO05778.5prime
CAGTCGACATGGTAACGATGAACTCGGAGGCGGACAAAACACAAGCCACC
AATGCCAGCAGCACCGCGGCGCCGGCCAAAACGGACTGCACCAGCAGCAA
CAGCAGCGATCCGCTGGCGGTGGCCATTCCGGAGCCACAATCCGCCACCG
CCGTCGTTGGTGGAGGTGCAGGAGGAGCAGCACCCGGCACAGCCACGCCA
TCGCCAACACCACTGGCCAATGGCAGTAACAATGGCACTGGGTCATCGGT
CTCACCGGCAGCAACAGGAACAGGAGCAGTAGCCACAGCAGCAAGTGCTC
CAGCAGCAGCAGGCACAACATCGGCATCCCCGCCAGCAAGCAACCCAACC
ACTGCATCCACATCGACAGCCAGCGTTGTTGGAGCCAAGACGGCAGCGGC
CACCACCACATCCTCCTCTTCGGCCACATCCTCGTCGACGGCGGCGGCGG
GCAGCAAGCAGAGCGGCTCTAGCGGCGGACTGCTGACCGTCAGCGGGAAC
CACCATCACCACCACCACGCCCACCCACAGCAGTCGGCGGCGGGTCAATC
GGCCGCCCAGCCGCCCCAGCCGCCCACCGCAACCGCCTTAGCGGTTCCAT
CGGCGTCGCACCACCAACGCGGCGGAAAGAACGAGGATGCACCCAATATC
CTAGTGTACAAAAAAGATGGAGGCCATCATCGAGAAGATGCAGGCGGAGT
CGACGGGCGTGGCCGGTGCGCACGGTGAACGCGTTCATGAGCAAGGTGCC
ATCGGTGTTCACGGGTGCGGATCTGGTCGCCTGGATTCTCAAGAACTTCG
ACGTGGAGGACGTGACGGAGGCCCTGCACTTTGCCCACCTGCTCAAGCTC
GCATGGGTACATATTTCCCATCGATGATCGTGGCGCTGAACGG
UFO05778.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RSG7-RB | 5496 | CG9108-RB | 627..1503 | 9..889 | 4275 | 99.3 | Plus |
| RSG7-RA | 2777 | CG9108-RA | 627..1503 | 9..889 | 4275 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16843152..16843807 | 664..9 | 3280 | 100 | Minus |
| X | 23542271 | X | 16842618..16842830 | 879..665 | 960 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:19:06 has no hits.
UFO05778.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:32 Download gff for
UFO05778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 555..1439 | 2..893 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:13 Download gff for
UFO05778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 555..1439 | 2..893 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:07 Download gff for
UFO05778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RSG7-RA | 622..1506 | 2..893 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:07 Download gff for
UFO05778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16842605..16842828 | 667..893 | 96 | <- | Minus |
| X | 16843151..16843812 | 2..666 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:13 Download gff for
UFO05778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16736638..16736861 | 667..893 | 96 | <- | Minus |
| arm_X | 16737184..16737845 | 2..666 | 99 | | Minus |
