UFO05779.5prime Sequence
1123 bp (999 high quality bases) assembled on 2009-07-25
> UFO05779.5prime
CAGTCGACATGGCCAGACTCACAAAGGTCTACAACACGGACGACGACGAC
TCCGGTTACGTTGGTCGCAGAAATTTGCCCCTGGTGGCTGGCGATAAATT
AATGATGCTCATGGACCTGAACAGCAAAGGTCTAGTGATCGACAGTCCGC
TGATCCGCGGACGTGAACTGGAGGAGTTTTCACGGAAATTCAAACTGCTC
ACAGAGGCCGAGCGCCGGCAATCGCTGGAGATCGACAGTGCCAGTTTTAT
GGAAGTCCTCAATCAATGTGTCCAGTGCGTTGGCTGCCGCAGACGCGTAG
AGCGGTTGTTTCACCAACTAACCGAGACGGGGCACCGAACACTTGATCCG
CTGGAACTGCGACCCACTGCCACCCTGGGCATTGTGGAGGAGAAGCTTAA
GACTCCGCAGGCACTGGGAACGCTGCTCTACCGGCACCATGAGGTTCTCA
ACAACCTGCTGGACAACAAACTGCGAAACAAGACGCGCTGCGTTCTTCAT
TCGCTGGACGCCTTTCGTGCCAAACCCTTTTCGGAGACATGGCGAGAGGT
GTGGTCCGCCATGAAGAGTAACTGCCGCAACGAGTTAACCATCATCGAGA
CAAAGGAATTGCACGACGTACTGGAGAACTACCTGAAGAAGCACAAGTTT
TGCTCTGGCTGCCGTACAAAGATTGAGCGCGCCTACAAAATACTCATTGG
TGAAATATCGTCCAAGGAGAAGGGCTATGCGGCCCAGTTGTACGCTCATA
TTCGGAAGTGCGTGCCCGACCAGCACATCCACGTGACCACAAACAAGATA
GAGTTCCTGGACGCGCTGATCAAGCGGGCCGAGCCCGAGGTGAACGGTAG
CTACTCTAAACTGCGCGAGCGCCACGCTAAGACGCTGGAGATTGCCCAGG
AAGAGGTGCTGACCTGCGTGGGCATGATTATGTACGAACGGCTGCGTCGC
ATCTACGTCAGTCTTGCGGGAGGAGGAAGCGGCGCATGCCAGGTGCTGGC
GCCTTGTGGTGTCCACGCCTTTGCCGCCAGCTTGACACGTTCGTGGGAAC
GAAAGCAGGAATCAGCAATTCTGGAGCTACCTCTACCAAAGAAATCAGCC
TGCTGAAAGGCAAGCGAATCAGT
UFO05779.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2182-RA | 2415 | CG2182-RA | 283..1380 | 9..1110 | 5080 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5658141..5658708 | 671..104 | 2840 | 100 | Minus |
| 3R | 32079331 | 3R | 5657560..5657934 | 1046..670 | 1560 | 96 | Minus |
| 3R | 32079331 | 3R | 5659535..5659630 | 104..9 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:16:53 has no hits.
UFO05779.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:42 Download gff for
UFO05779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 276..1384 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:40 Download gff for
UFO05779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 279..1387 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:35 Download gff for
UFO05779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 279..1387 | 1..1115 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:35 Download gff for
UFO05779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5657491..5657932 | 672..1115 | 94 | <- | Minus |
| 3R | 5658141..5658707 | 105..671 | 100 | <- | Minus |
| 3R | 5659535..5659634 | 1..104 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:40 Download gff for
UFO05779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1483213..1483654 | 672..1115 | 94 | <- | Minus |
| arm_3R | 1483863..1484429 | 105..671 | 100 | <- | Minus |
| arm_3R | 1485257..1485356 | 1..104 | 96 | | Minus |
