UFO05783.5prime Sequence
1052 bp (892 high quality bases) assembled on 2010-12-10
> UFO05783.5prime
CAGTCGACATGGCCTACATCAACATCGCCGAGTGGACGCCCGACCAGGTC
ACCGACTGGATAAAAGGTCTGGATGAGTCTATGAAGGGGTATTTGTACGA
GTTCTCCAAGCAGGAGATCGGCGGACGGGCGTTGCTCAACATACGGCCAT
ACGAGCTGGAGAATCTGGGCATGCTGCGCATTGGCCATCAGGAGATCGTG
CTGGAGGCGGTGGAGAACTTAAGAAACTTCCATTATCACCTGAAAAACGA
CAATCTGCAGTTCATGGCCTTGCATGTGGCCACGGCAGCTAAGAATCTGC
ATCGCGAACTGGCCAGGAATCATGCGGAGAGCACTAAGATCGATACCCGG
ATACTGCACGATATTACCAGGACGATAGCTACTCTAAAGCCATTGGTGGG
CAGCCTGGAGCGAACACCGTTCCGTAAGCAGGAGATGTACCGCGAGTATT
GTGGCAATGTGCTCAAATGCGGCCTGGAGCTGGCCACAATTGCCCACCGT
GATCGTTTTGCCCTGCAGCCGGTGCCAGCGATTCGACAGTCAGCGGAACG
GCTCGAGAATCTTGCCAACTTTGTAATCCAGGACATATCTGATCCCATGG
TACTGCAGCCAGCCTCTCTGAACCTTGTCACCCTTAAAAAACGCGAATCC
GAGTTGGGTTTCAACATAGAGTCCAGTTATAATGGCATTCACCGTGTCAC
GGATATCAAGTACAACTCGCCAGCTCACAATTCCGGAAAAATCGAAGATG
GCGACGAGATTGTGCAGATCAACTACCAGACCGCTGTGGGCTGGCAGCAT
CGCACAGTACTGGGAGCATCTGAGGGAAGCACTTTCAGATGTGGTGCTGG
ACGGTGAAGAAACGGCCGAAGCAACACAAAAAGGTTTGGACAGGATCTAT
AATGCAGCGCTACAGTTGCCCAGCAAGAAGAGGAATAATGGCGGCCCGCG
TGGGCGGGGCGAATGCCCACTCCCGTGCTGGCATTTTAACCTGGACACGA
GCTACTGGCGACAGGAGGAGCAAGGAAGCGCGGTGCCGATCCAGATAATC
CC
UFO05783.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cnk-RB | 5816 | CG6556-RB | 540..1570 | 9..1042 | 4585 | 97 | Plus |
| cnk-RA | 5397 | CG6556-RA | 121..1151 | 9..1042 | 4585 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17418222..17419024 | 1037..231 | 3170 | 96.2 | Minus |
| 2R | 25286936 | 2R | 17419084..17419249 | 230..65 | 830 | 100 | Minus |
| 2R | 25286936 | 2R | 17419409..17419468 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:18:57 has no hits.
UFO05783.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:30 Download gff for
UFO05783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnk-RA | 127..1173 | 1..1052 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:05 Download gff for
UFO05783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnk-RA | 116..1162 | 1..1052 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:01 Download gff for
UFO05783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnk-RA | 116..1162 | 1..1052 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:01 Download gff for
UFO05783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17418205..17419024 | 231..1052 | 95 | <- | Minus |
| 2R | 17419084..17419247 | 67..230 | 100 | <- | Minus |
| 2R | 17419411..17419473 | 1..66 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:05 Download gff for
UFO05783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13305710..13306529 | 231..1052 | 95 | <- | Minus |
| arm_2R | 13306589..13306752 | 67..230 | 100 | <- | Minus |
| arm_2R | 13306916..13306978 | 1..66 | 95 | | Minus |
