UFO05786.5prime Sequence
1109 bp (999 high quality bases) assembled on 2010-12-10
> UFO05786.5prime
CAGTCGACATGGTTGGAGTTACTGCCGACGCCTCGCAGGCGAATCAGCTG
TCCTCGGTCCGGAACCCGATGATCAAGTACATGCTGAAAACACGGGAGAA
TCATGCTCGGGAACAGGATCGCGACTACTCGCATGTCTTCCGCCGGAAGA
CGCGGTTCGAGATGTTTCGATTGTCCGCCATCGCCATGGCCATTGAATTT
GCCTATGCGGCGGAGACGAGTTTCGTCTCTCCGATTCTCCTACAGATCGG
TGTGGATCACAAACACATGTCCATGACCTGGGGACTGTCGCCACTGATTG
GATTCTTTATGTCCCCGCTGCTGGGAAGTATTAGCGATCGCTGCAAGCTT
CGTTGGGGTCGCCGACGTCCAATTATCTCGATTCTATCATTTGGCATAAT
GTGCGGTTTGATTCTGGTGCCATATGGCAAGGATCTGGGTCTGCTGCTTG
GCGATGCCGGATATACTTATGCAGAGTCAGCCTTGAATTTCACATCTTCG
TCGGGGGGATCTGTGGCTGCTTTGGTTTCGGGTGAAGCGACGACAGGACC
TTCTGCATCCGACTATAAGTTCGCCGTGATCCTTACGATTTTGGGCATGG
TCCTATTGGATTTCGATGCGGATACCTGCCAGACACCGGCTCGCACTTAT
TTACTGGATATGTGTGTGCCAGAGGAGCAGCCGAAAGCCATGACCATGTT
TGCGCTCTTCGCGGGATTCGGCGGCACGATTGGATATGCCATTGGAGGAG
TGGATTGGGAGACAACGCATATTGGCAGCTTCATGGGTGGCAATATACCC
ACTGTATTCACCCTGGTCACCATCATATTCGCGGTGTGCTATCTTATCAC
GGTGACCACATTCCGTGAAATTCCATTGCCCTTGATCGAGCAGATGAGCT
GCTGAGACCGCTGTCCGAACAGGCCATCAGGAAGGAGTTGAAAAAAAGAA
CAATACCATTTACTATTATCCAGGAGACCACACAGCTGGAGCTTCAGATG
GCGTGATGATCCCAGCGATTGGAGGCACTGCAGCAGCTATCGAATGCTAT
TCCCCCGCTGTGGAGAGCAGATTCCAGATTTGGAGACCGTCGGATTCATG
CTCCGTTCC
UFO05786.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slc45-1-RD | 2378 | CG4484-RD | 328..1393 | 9..1066 | 5075 | 98.9 | Plus |
| Slc45-1-RC | 2161 | CG4484-RC | 111..1176 | 9..1066 | 5075 | 98.9 | Plus |
| Slc45-1-RB | 3007 | CG4484-RB | 957..2022 | 9..1066 | 5075 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9204435..9205500 | 1066..9 | 4875 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:19:20 has no hits.
UFO05786.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:34 Download gff for
UFO05786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4484-RA | 892..2015 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:22 Download gff for
UFO05786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slc45-1-RB | 948..2071 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:15 Download gff for
UFO05786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slc45-1-RB | 948..2071 | 1..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:15 Download gff for
UFO05786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9204386..9205506 | 1..1104 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:22 Download gff for
UFO05786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9197486..9198606 | 1..1104 | 97 | | Minus |
