UFO05787.5prime Sequence
1118 bp (990 high quality bases) assembled on 2010-12-10
> UFO05787.5prime
CAGTCGACATGAGAATCCAAATCTTGCTCCTGACACTCTTGCTGGGCCTC
GTCTGCGCCCAGGCCGTGGATGCGGAGGCCAAGAGCAGCCAAGCCAAGCC
AGCGGAAGACAGCAAGAGCTCCGCCTCCACGCCACTGGAATCGGAGGCGA
CCAAAGACAAGCGACAAGTGAGCTCCAAGGAGACGTCTCTGTACCCCAAC
CACCGCAGCTCGGCGGCATCGTCAAGCGCCAACGATGATCCCGAGGATGG
TCAGGAAACCATCTACGGCTCCAAGCCGAATCAGTTCATCATTCGCCCCA
TTGCACCGCACCAGCATCAGCAGCACGAATCGCACCAGGAGCCGCAGTTG
AGGAACTTTGCGGCGGCCAATTCTCGACCCCATGCCGCCCAACTTCTCGA
GCAGAGTCAGGAGGTGCAGCACTACGTGTATCTGCAAGATATAATGCGCC
ATCATCAGCCCAAGGCCCTGCTGGCCGCAGGTCAAGGCAAGGGTGCGGCC
AGTGCGCCCAAGAAGTCATCCACTCCGGTGGCCGAGGAGGAGCAGGAGCA
GGAACAGGAGGCGGAACAGCGATACGCGGTGTCCATTCAGCCGCAGCCGC
AGCAACAGCTCCAGCTCCAGCAACCACGTCCACGTCAGTACCAGGGTCCC
TATCAACTGCCATTGCCGCTGCCTGCTCCACAGCATCGATCGGTGAATCC
CCAGCAGCAGCAGCAGCAACATCAGCAGCCCTACCAAGTGATTCCCGAAG
AGCAGTTTCTTAAGATCCTGGAGGAGGAGCTGCAGGCTAGAGCCTATCAT
GAGCAACTTCGTCAGCAGCAGCAGCATCACAGCAGCAGCAGCAGCAGCAG
CAACACCAACAGCAGCAGCAGCAACAGCACCACAGGCAACTGCCATCCAC
AGCACGGCTGCCACTTCAAAAGGTTGTTGCAGCAGGCGGATCCCCTCGCT
AGGATTAGGCGGCTATCGCGAGCGTTTTGTGACGAGCAGGAACTGGTGAC
ACCAAACTTTATCGCACTCCCCGCGGTGGATCCCAAATATCTTGGCCCTT
GCCAAGGGCGCAGCAATCGCAAGAAGAATGAATGAGCAACAACAGACATA
CACCCGCAAGCGGGTGCA
UFO05787.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34382-RE | 2864 | CG34382-RE | 329..1428 | 9..1118 | 4965 | 97.4 | Plus |
CG34382-RC | 3091 | CG34382-RC | 556..1655 | 9..1118 | 4965 | 97.4 | Plus |
CG34382-RF | 2858 | CG34382-RF | 329..1422 | 9..1118 | 4865 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9880205..9880576 | 45..416 | 1860 | 100 | Plus |
3L | 28110227 | 3L | 9882300..9882616 | 412..728 | 1585 | 100 | Plus |
3L | 28110227 | 3L | 9882676..9883010 | 727..1066 | 1085 | 93.9 | Plus |
3L | 28110227 | 3L | 9879540..9879577 | 9..46 | 190 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 17:19:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..7132 | 588..986 | 306 | 56.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2665 | 588..921 | 278 | 56.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2654 | 588..922 | 209 | 56.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6923 | 535..726 | 195 | 58.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1065..1160 | 535..630 | 164 | 66 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2889 | 600..723 | 134 | 56.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1085..1154 | 588..657 | 116 | 62.9 | Plus |
UFO05787.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:35 Download gff for
UFO05787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34382-RC | 550..1654 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:24 Download gff for
UFO05787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34382-RC | 550..1654 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:17 Download gff for
UFO05787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34382-RC | 550..1654 | 1..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:17 Download gff for
UFO05787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9882302..9882616 | 414..728 | 100 | -> | Plus |
3L | 9879534..9879576 | 1..45 | 91 | -> | Plus |
3L | 9880206..9880573 | 46..413 | 100 | -> | Plus |
3L | 9882678..9883056 | 729..1117 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:24 Download gff for
UFO05787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9875778..9876156 | 729..1117 | 92 | | Plus |
arm_3L | 9872634..9872676 | 1..45 | 91 | -> | Plus |
arm_3L | 9873306..9873673 | 46..413 | 100 | -> | Plus |
arm_3L | 9875402..9875716 | 414..728 | 100 | -> | Plus |