UFO05789.5prime Sequence
1048 bp (922 high quality bases) assembled on 2010-12-10
> UFO05789.5prime
CAGTCGACATGGGTTCCAACGGCGAAGAATTATTGAATTTCGCAATGAAC
TCAGACAGCGTAAATACCATAAATTCAACAGCGGACGTCGCAGAAATTGT
CTTAGACACTAATTTAGAGTTCAACAAGACGATTCCTTTTCATCTGCCTC
AGGAGTCGGACGTGGAAATGGTCTCTGTCAGATCAGCTGCCGAACCTGAT
CCTAACAAATCAGATTCCAAAGCAAGTAATAAATCAGATTCCAAATTAGA
TGGTAAATCGATATTAGAGTCAGGAACCAAACCTCAGGCGGCCCCGGGGG
AGGTTTTCGCTAGGAAGGCATGCCTCAAGAGGACCAACGAATATCCTGCT
CCGCTGAATCATACTCTCAAGAAACTGAACTGGAAGTTTAACCTGCGTAT
ATTGATCTCAAATCTGTACATGAAGAGCGAGGATCGTCTTCCGGGAGCTT
GTGTTTCCAGGTGTCTTTACAATACTAGTCTGTGCACGCAAAGACATCGG
TGCTCCGCGCTTCCGGATGGCCCAAACTTTGCGGCCGTTCAGGCGCTACG
AACCACGTTGCACGGCCAGCACTACGATACATTCCTGGACATTCTGGAGA
TGATGGTGTTGCAGGGTGTCTACCCAGGCGAAGGAGTCTTTGACAGACTA
ATAGATATGGCCATGATCCTAATTGCCAAAGAGATAAGCGTAAAAGGAGC
TTGGCGACATCTACAACAAACTTATACGCACCTTTTTTCTTTTGGTCGAC
GCCTTTCCCCCGTGCTGGACAGCCCCTGCGTCCTTACTACTTTGAGTTTT
CTGGGCGTCTCGCATCCCCCTTGCGAGAAACACGTTCAACCAATTCTACC
AAGAAGTTGCAGTCTTCATCGACCTTTTTGAGGAAAATCTTACGCTTTGC
AGCGATGATAGATACGTGAAAACACTAATTCTATGAAAGTTGGTGTTTAA
ACTTCTCGTAGAGGAGATGCGATATGTCCAGGAAACGGTCTTTCTGCGAC
ATGTAAGCATATGACCTGCCAATGGCAGCTTTGCCTGACGACTCAGAA
UFO05789.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5664-RB | 2630 | CG5664-RB | 195..1208 | 9..1015 | 4580 | 97.6 | Plus |
| CG5664-RA | 2621 | CG5664-RA | 195..1208 | 9..1015 | 4580 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21440513..21441169 | 665..9 | 3285 | 100 | Minus |
| 3L | 28110227 | 3L | 21440110..21440455 | 1005..665 | 970 | 92.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:19:28 has no hits.
UFO05789.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:36 Download gff for
UFO05789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 155..1173 | 9..1021 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:26 Download gff for
UFO05789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 195..1213 | 9..1021 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:19 Download gff for
UFO05789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 195..1213 | 9..1021 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:19 Download gff for
UFO05789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21440099..21440454 | 666..1015 | 93 | <- | Minus |
| 3L | 21440513..21441169 | 9..665 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:26 Download gff for
UFO05789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21433199..21433554 | 666..1015 | 93 | <- | Minus |
| arm_3L | 21433613..21434269 | 9..665 | 100 | | Minus |
