UFO05792.5prime Sequence
1080 bp (949 high quality bases) assembled on 2010-12-10
> UFO05792.5prime
CAGTCGACATGCCCAGTGAAAATCATCTGCATCACCATCACTTGGGACAC
ACTGGTGGATTATCTCCGCATCATCATCACTTGTTGGACACATCCTGCAG
CAATACGGGAATCACTGTGACAGAACATCATCATGGTCTCGACTTGACCA
CCACACTGCGCAGTGAACTGGCTGCGTTGTCCTACAAAAAGGAGCGACTT
ACGGGGGAGCTTGCTGAAGCGCGTGCAGCATTGTGCAGCAAAGATGCGGA
TATCGAGAATCTGCGAGCCCAGGCTGCTCGGCAGACTGCCCTCATCGGAT
CCCTCCAGAGTCGTCTGCAAAACTCGGAGAGCAGGGAGCAGGCTGTCCAG
GCCCGATGTGATTCCACCATTCAGACGGTGCAGCGGGAGAAGCGTAGCTC
CGACGAGCGCAACAAAGAGCTAATCTGCAAGATACAGCATCTGGAAACGC
ATATGGCCAGTGAGGAATCGCAAAAGGAGCAGATCAAGGCTCAGCTGCAC
GATCTCCTGCGACGCCTTAGCATCACTTTGGGAATGGATGTGTGCGATGG
CAATCAGAATTCCCATGCCACACCCGAGTGCATCATCTCGCGGGCCGAGG
AGGTGATGGTGGAGCTGCAAAGGACGAAAGCCAAGGTCAGTTCCACCTGC
GACACGCTCAGCTCCTGCGAAAATGAACTGCTCAACTTGAAGTCGCTGGC
CAACATTGAGAAGCAGCGGCTCACGGCCCAACTTGATGGAGCTGGCAATC
ACAACCACGAGTTGGAAGGACGCTGTCGCCAATACGAAAGGGATCTTCAG
ATCCAAAGAGATCGCTTGACTGAATCGGAATCAACGGCGAGAAGCTCAAG
GAAGAGCTGCGCGGCTTTGAGTCGCGATGCCATCGTTTGCAAAACACCCT
GGACCGGACTCAGGCGATCGTCTGCAGTTCTTTGCGGGATTGAGCAATCT
TCTGGAATGTTCCCGAACCGTGCGAACCGCTCATCAAGGACCAGCTGAGA
GAGATTCTTGGCGGAAACAGGCATGCATGGCGCCAAATGCACTCCCCGCG
AGATCAGCTGACTCGGAGCATTGATAGCTT
UFO05792.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43338-RA | 2631 | CG43338-RA | 78..1142 | 9..1071 | 4945 | 98.2 | Plus |
| CG43338-RB | 2694 | CG43338-RB | 217..1205 | 85..1071 | 4580 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18668566..18669367 | 1008..208 | 3760 | 98.8 | Minus |
| 2L | 23513712 | 2L | 18669438..18669562 | 209..85 | 625 | 100 | Minus |
| 2L | 23513712 | 2L | 18669888..18669966 | 87..9 | 380 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:19:31 has no hits.
UFO05792.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:36 Download gff for
UFO05792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31790-RA | 74..1147 | 9..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:27 Download gff for
UFO05792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43338-RA | 78..1151 | 9..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:20 Download gff for
UFO05792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43338-RA | 78..1151 | 9..1080 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:20 Download gff for
UFO05792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18668541..18669365 | 210..1032 | 98 | <- | Minus |
| 2L | 18669438..18669563 | 84..209 | 99 | <- | Minus |
| 2L | 18669892..18669966 | 9..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:27 Download gff for
UFO05792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18669438..18669563 | 84..209 | 99 | <- | Minus |
| arm_2L | 18669892..18669966 | 9..83 | 100 | | Minus |
| arm_2L | 18668541..18669365 | 210..1032 | 98 | <- | Minus |
