UFO05793.5prime Sequence
1086 bp (970 high quality bases) assembled on 2010-12-10
> UFO05793.5prime
CAGTCGACATGGCAATCTCCGCTTGGATGCCGCTTCTGGTGGCGCTGATC
GTCGTGTGGATTTCGGCAGCGGAGGTCGACGCACAGGTGCCGGGACCACG
GACTCGATACCAACCCAACTGGGCCAGTTTGGACCAGAGACCATTGCCCC
AATGGTACGACGATGCCAAGGTGGGCATCTTTCTGCACTACGGCGTTTAC
TCGGTGCCCAGTTTTGGTTCCGAGTGGTTCTGGACCAACTGGAAAAATCT
TCGCAATCCAGAGTACGTCCAATTCATGCAGCGTAATTACAAGCCCGACT
TCACTTATCAGGAATTTGCCAGTCAATTCACAGCGGAGCTATTCAATGCC
ACCAAGTGGGCGTTACTTTTCAAAGATAGCGGAGCCAGATATGTTGTGCT
CACCAGCAAACATCACGATGGCTTCACGCTGTGGCCCTCGAAGAATAGCT
ACGGATGGAATTCCATGGATGTGGGACCCAAACGAGATATAGTCAAGGAA
CTGGCTGCCGCAATTCGAAAGGAGTCCGATCTTCGTTTTGGACTCTATTA
TTCTCTATTCGAATGGTTCAACCCACTGTGGACCGATGACAAATTGCATC
TGTTAATGCAACAGCACTTTGTGGAGCGAAAGGTGCGGCCGGAGCAAATG
GAACTGGTGCAGCAGTATCTGCCGGAGATCATCTGGTCCGATGGCGATTG
GGAGGCTCCAGCGAAATACTGGCGCTCCGAGGAGTTCATCGCCTGACTAT
ATAATGATAGTCCTGTAAGGTATACGGTGGTGACCAACGATCGCTGGGGC
TTCGGCACTGCGTGTATGCATGGTGACTTCTACAATTGTGCCGATCGCTT
CAATCCCGTGTTCTGCAAGCTCACAAGTGGGAAAATGCCTTCACCCTGAT
CGCACCAGCTGGGGTCAGCGATTCGATGTCTCTTTGTCGATTTATGACCT
CCAAGGAGTCATTAAAGAGATATCACACTGTGAGCTGTATGCATGTGCTG
ATCATGTGACACAGGTTGTACCATACTGCCATTCAGGACGTCTAGAATGG
TTCCTGGCTGAGTCATGCGAGGATTACGGCAGGTAC
UFO05793.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11714-RD | 3514 | CG11714-RD | 1917..2922 | 9..1004 | 4750 | 98.8 | Plus |
| Fuca-RC | 3513 | CG6128-RC | 1917..2922 | 9..1004 | 4750 | 98.8 | Plus |
| Fuca-RB | 1675 | CG6128-RB | 79..1084 | 9..1004 | 4750 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11519558..11520034 | 967..496 | 2110 | 98.1 | Minus |
| 3L | 28110227 | 3L | 11520509..11520746 | 246..9 | 1190 | 100 | Minus |
| 3L | 28110227 | 3L | 11520294..11520435 | 388..247 | 710 | 100 | Minus |
| 3L | 28110227 | 3L | 11520106..11520214 | 495..387 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:19:33 has no hits.
UFO05793.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:37 Download gff for
UFO05793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fuca-RB | 70..1124 | 1..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:29 Download gff for
UFO05793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fuca-RB | 73..1127 | 1..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:56:23 Download gff for
UFO05793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fuca-RB | 73..1127 | 1..1038 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:56:23 Download gff for
UFO05793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11520509..11520751 | 1..246 | 98 | | Minus |
| 3L | 11519558..11520034 | 496..967 | 98 | <- | Minus |
| 3L | 11520106..11520212 | 389..495 | 100 | <- | Minus |
| 3L | 11520294..11520435 | 247..388 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:29 Download gff for
UFO05793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11512658..11513134 | 496..967 | 98 | <- | Minus |
| arm_3L | 11513206..11513312 | 389..495 | 100 | <- | Minus |
| arm_3L | 11513394..11513535 | 247..388 | 100 | <- | Minus |
| arm_3L | 11513609..11513851 | 1..246 | 98 | | Minus |
