UFO05803.5prime Sequence
1126 bp (1013 high quality bases) assembled on 2009-07-20
> UFO05803.5prime
CAGTCGACATGCCATTTCCGTCTCTTCAGGAATGTGAGCAAATGGTGCAG
ATGCTTCGAGTGGTCGAGCTGCAAAAAATCCTGTCGTTTCTGAACATCTC
ATTCGCTGGACGAAAAACTGACCTGCAGAGCCGCATCCTCTCGTTCTTGC
GCACCAACTTGGAACTGCTTGCCCCGAAGGTCCAGGAAGTCTACGCCCAG
TCCGTGCAGGAACAAAACGCCACGCTGCAGTACATCGACCCAACCAGGAT
GTACTCGCACATCCAGCTGCCGCCCACCGTGCAGCCCAATCCCGTGGGCC
TCGTGGGCAGCGGCCAAGGTGTGCAAGTGCCCGGCGGCCAGATGAATGTG
GTCGGCGGCGCACCCTTCCTCCACACACACAGCATCAACAGCCAGCTGCC
TATTCACCCCGATGTGCGGCTGAAAAAGCTAGCCTTCTACGATGTACTCG
GAACGCTAATTAAGCCTTCAACTCTGGTGCCACGCAACACTCAGCGCGTC
CAAGAGGTGCCTTTCTACTTCACGCTCACGCCGCAGCAGGCCACCGAGAT
TGCCTCTAATCGCGACATTCGCAACAGCTCCAAGGTGGAGCACGCCATTC
AGGTTCAACTGCGCTTTTGCCTGGTGGAGACTTCGTGCGACCAGGAGGAC
TGCTTCCCGCCGAACGTAAACGTCAAAGTGAACAACAAACTCTGTCAGCT
GCCTAATGTCATTCCTACAAACCGACCAAATGTGGAGCCCAAGCGTCCGC
CGCGACCCGTTAATGTCACGTCCAATGTAAAGCTGTCGCCTACCGTCACC
AACACCATAACGGTTCAGTGGTGTCCGGACTACACTCGTAGCTACTGTCT
GGCCGTATACCTGGTAAAGAAGCTCACCTCAACACAGCTTTTGCAGCGAA
TGAAGACGACGGCGTAAAACCAGCGGACTACACGCGAGGCTTAATCAAGA
GAAGCTGACTGAGATGCTGACTGCGAAATAGCCACCCCTATGCTGAAGGT
TTCCCTACTGCCGTGGCAAGATGAAATGTGCTGCTGCAGCTCACTGCCGA
TCTGCATGCTCATGCAGTCTACTGCATGATGACGTAGCCATGGAACTGCT
ATGCCAGCGCATTGGAACCTGTCTAT
UFO05803.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)2-10-RK | 2632 | CG8068-RK | 535..1565 | 4..1026 | 4930 | 98.9 | Plus |
| Su(var)2-10-RG | 2632 | CG8068-RG | 535..1565 | 4..1026 | 4930 | 98.9 | Plus |
| Su(var)2-10-RF | 2548 | CG8068-RF | 535..1565 | 4..1026 | 4930 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9117152..9117852 | 4..704 | 3490 | 99.9 | Plus |
| 2R | 25286936 | 2R | 9117917..9118157 | 705..944 | 1140 | 99.2 | Plus |
| 2R | 25286936 | 2R | 9118218..9118278 | 947..1006 | 240 | 96.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:02 has no hits.
UFO05803.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:33:31 Download gff for
UFO05803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-10-RG | 560..1606 | 1..1034 | 98 | <- | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:06 Download gff for
UFO05803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-10-RF | 529..1577 | 1..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:57 Download gff for
UFO05803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-10-RF | 529..1577 | 1..1041 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:57 Download gff for
UFO05803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9117917..9118157 | 705..944 | 99 | -> | Plus |
| 2R | 9117146..9117852 | 1..704 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:06 Download gff for
UFO05803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5004651..5005357 | 1..704 | 99 | -> | Plus |
| arm_2R | 5005422..5005662 | 705..944 | 99 | -> | Plus |
