UFO05804.5prime Sequence
1084 bp (995 high quality bases) assembled on 2009-07-20
> UFO05804.5prime
CAGTCGACATGGCTGCCCTACAACGGAAGCTGGTGCACAAGCAGTTCAAC
TCGCCCATGGGCCTCTATTCCCAGGAGAACGTGAAGGCCACATTGAACCG
CGAGCTGAAAGCCTTCGGCGGCGAGGGGATTGAAGTCGACGATCAAATAA
CGAAGCCCCTGAACTTGGCCAACTCGGCCGTTCTGCGCGCCGTCGAAGAG
GAAGAACAACAAGCCAAATGTGGCTACAAGCGTGTGGCCTGGCCACCGGC
CTCCGAGGAGCGGATCATCCGGGAGTTCACCCCCCAGCCGCAGACTCAGA
GTCCGGCTCCCGGTGCCGGAGGCTACTATCCGCAGGCCCACGCTCCCACA
GCAGCAGCTGCCGCTCCACCTCAGGGTCCCATTTATAACAACGTCCAGCC
ACGCACCACCCAAACACCACAAAATGCCTACCCATCGGCACCACAAACCA
CCAGCACCGCCTACCCCACCAACCAGTACCCAGATAGTTATTCGCATCAG
GAGCAGCAGCAGCAACAGCAGCAACAGCAGCCTGTGCAGTACACACAGGC
GCAGTTCGGTCGGCAACGCTCGAGGGAACCCGTCCAGGTTTCAGCTCCAT
CTCCAGCTCCCGCAACCGATCCCAGCGGTTATCCATACCAGGCTAACTAT
CAGTCCAACTATCCGCAGGAGCCGCTGCAGGCAGTGAACAATGTGGGTGG
TGGCTGGAAACACATTGGTGCTCCGCAGCCTAAGTCACGCAGTGAATTCA
CCGCCGGCAATGGAGCCTATCCCCCGTTCCAGGGATCCTACCAGCAGCAA
CAACAGCAGCCGCAGCAGCAGTACGGTGCTCCGTCTTACGATGGCCAGCA
GCCTGAGCACAGTGGCAACAGCAACAGCAGCAGCAGCAGGTTCCGCAGCA
GCAGTATCAGCCTCAATCGCAGCTCAGCGTCCTATCAGCCACCACAGTGA
ACAGCAGCAGCAGCAGCAGCAGCAGCATCGTACATGCTTCACCGTACACA
GCAGCACAGCACAGCATCTATTACCAATGACAAATGTGACCGACTATGCT
CACCCCCTTACCATTTCTTATTCGCACTCAGTGC
UFO05804.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RJ | 3076 | CG43897-RJ | 243..1327 | 9..1076 | 4815 | 97.3 | Plus |
| CG43897-RC | 3497 | CG43897-RC | 664..1748 | 9..1076 | 4815 | 97.3 | Plus |
| CG43897-RB | 3240 | CG43897-RB | 407..1491 | 9..1076 | 4815 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9830996..9831440 | 371..815 | 2225 | 100 | Plus |
| 3L | 28110227 | 3L | 9830633..9830786 | 222..375 | 770 | 100 | Plus |
| 3L | 28110227 | 3L | 9820441..9820560 | 9..128 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 9832195..9832364 | 812..976 | 590 | 95.3 | Plus |
| 3L | 28110227 | 3L | 9824545..9824641 | 127..223 | 485 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6942 | 789..1006 | 328 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6923 | 790..973 | 313 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2512 | 790..1011 | 261 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2557 | 790..1024 | 250 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2806..2999 | 790..1004 | 235 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..7009 | 790..1023 | 215 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2832 | 454..976 | 209 | 54.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..7035 | 790..1003 | 195 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..7081 | 790..1059 | 173 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2395..2514 | 790..908 | 165 | 60.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1044..1163 | 777..902 | 158 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2413..2669 | 790..1036 | 154 | 57 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1113..1146 | 790..823 | 134 | 88.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2458..2668 | 790..1022 | 132 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1587 | 788..819 | 124 | 87.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1567 | 792..820 | 118 | 89.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1546 | 791..820 | 114 | 86.7 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 935..1037 | 735..836 | 114 | 64.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 151..176 | 788..813 | 112 | 92.3 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9181..9206 | 788..813 | 112 | 92.3 | Plus |
UFO05804.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:33:32 Download gff for
UFO05804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-RC | 648..1651 | 1..997 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:44 Download gff for
UFO05804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RB | 399..1402 | 1..997 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:25 Download gff for
UFO05804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RB | 399..1402 | 1..997 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:25 Download gff for
UFO05804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9820433..9820559 | 1..127 | 96 | -> | Plus |
| 3L | 9824546..9824640 | 128..222 | 100 | -> | Plus |
| 3L | 9830634..9830785 | 223..374 | 100 | -> | Plus |
| 3L | 9831000..9831440 | 375..815 | 100 | -> | Plus |
| 3L | 9832199..9832387 | 816..997 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:44 Download gff for
UFO05804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9813533..9813659 | 1..127 | 96 | -> | Plus |
| arm_3L | 9817646..9817740 | 128..222 | 100 | -> | Plus |
| arm_3L | 9823734..9823885 | 223..374 | 100 | -> | Plus |
| arm_3L | 9824100..9824540 | 375..815 | 100 | -> | Plus |
| arm_3L | 9825299..9825487 | 816..997 | 94 | == | Plus |
