UFO05805.5prime Sequence
1114 bp (992 high quality bases) assembled on 2009-07-20
> UFO05805.5prime
CAGTCGACATGGACGAAATAAAGCTCGCCAAGGTGGAAAATGTGCGGATG
ATAGATCGCTACAATACCAAAAATCCCACGGTTGGCACACTCTATCTAAC
GGCCACCCATCTGATATTCGTGGAGCCCGACAGCAACAAGGAGACCTGGA
TCCTGCACATGCACGTGGCCAGCATTGAGAAGCTTCCCTTGAGCACGACA
GGATCTCCGCTACTCATCCGCTGCAAGACCTTCCTCTCCGTAACTTTCGT
CATTCCCAAGGACTCCGAATGCCACGATGTCTACACTTCGCTGCTGAAAC
TCTTCCAGCCGGTGTCCATCAACAAATTGTACTGCTTCAACTACCAGCCG
AACAAGGATGATTTCCCCAAGAACGCTGGCTGGGATTACTTTAAACTGGA
GGCGGAGTTCAAGCACATGCTGGTGCCCAACGAGGCCTGGACGCTGTGCT
CCATGAACGAGAAGTACGAGCTGTGCGACACCTATCCGCGTCAGATTTAC
GTGCCCAAGGAGGCCACCACGCTGATGCTCATCAGCAGCTCGCGATTCCG
CTCCAAGGGGCGGCTGCCAGTGCTCACCTATCTGCACAACAACAAGGCTT
CCATCTGCCGCTGCAGTCAGCCCCTGTCCGGATTCAGTGCCCGCTGTCTG
GAGGATGAGCAGATGCTGGAGGCCATACGCAAGACGAATTCCAACACGGA
CTACATGTATGTGGTGGACACGCGACCGCGGATTAATGCCATGGCAAACA
GAGCCGCCGGCAAGGGATACGAGAACGAGGCCTTCTACGAGAACATCAAA
TTCCACTTCCTCGGCATTGAGAACATCCACGTCCAGCGTGCCAGTCTGCA
AAAGTGCTTGAGGCCTGCGAACAGAAGTCGCCCACGATGAGCGCCTTCAT
AAATGCCCTGGAGTCATCCCGGCTGGCTGAAGCACCATTCGCTCCATATT
GGACACGTCGAGCTTCATCCCCCACGCCGTGACAAGGCGTCTCGTGGTGT
CCACTGCTCCGACGCTGGACCGCACGACCAGTCTGTTCACTGGCGCACTG
ATGCTGAACCCTACTACGACATCAGGCTTCAGCGCTATCGAGAGACTGCT
GCATCGGCAAGTCA
UFO05805.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3530-RB | 2810 | CG3530-RB | 229..1296 | 9..1067 | 4965 | 98.4 | Plus |
| CG3530-RA | 3063 | CG3530-RA | 503..1549 | 30..1067 | 4860 | 98.4 | Plus |
| CG3530-RC | 3193 | CG3530-RC | 752..1679 | 149..1067 | 4265 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23391389..23391674 | 597..312 | 1430 | 100 | Minus |
| 2R | 25286936 | 2R | 23390895..23391125 | 962..731 | 1015 | 98.7 | Minus |
| 2R | 25286936 | 2R | 23391741..23391904 | 312..149 | 805 | 99.4 | Minus |
| 2R | 25286936 | 2R | 23391192..23391328 | 731..595 | 685 | 100 | Minus |
| 2R | 25286936 | 2R | 23393364..23393482 | 149..31 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:00:23 has no hits.
UFO05805.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:33:34 Download gff for
UFO05805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-RB | 220..1302 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:25 Download gff for
UFO05805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-RB | 221..1303 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:03 Download gff for
UFO05805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3530-RB | 221..1303 | 1..1074 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:03 Download gff for
UFO05805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23391390..23391673 | 313..596 | 100 | <- | Minus |
| 2R | 23391741..23391903 | 150..312 | 99 | <- | Minus |
| 2R | 23393364..23393480 | 33..149 | 100 | <- | Minus |
| 2R | 23390895..23391124 | 732..962 | 98 | <- | Minus |
| 2R | 23391192..23391326 | 597..731 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:25 Download gff for
UFO05805.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19278418..19278647 | 732..962 | 98 | <- | Minus |
| arm_2R | 19278715..19278849 | 597..731 | 100 | <- | Minus |
| arm_2R | 19278913..19279196 | 313..596 | 100 | <- | Minus |
| arm_2R | 19279264..19279426 | 150..312 | 99 | <- | Minus |
| arm_2R | 19280887..19281003 | 33..149 | 100 | <- | Minus |
