UFO05808.5prime Sequence
1047 bp (969 high quality bases) assembled on 2009-07-20
> UFO05808.5prime
CAGTCGACATGGCCGAGTTCATAGCTGAGATGCAGGAGCGCCTGCTGCCG
GAATACGAGCAGATGAAGAACTACAGCGTATTCACAGCGGATCAGGTCAG
AGAAATCGTTAGCAGGCGGGAACGCTTGTTCCTTAAGATCAACAAGAGCC
ACCAGAGCATCACCGACTACCTGGACTTCATACTGTACGAGAAGCACATG
CACATGACCATCGTGGACAAGGAAAAGAAGATGCACGTTAAACTCACCGG
TCTAAAGGCCTCCATAGCCACGCGGATCATGCGCCTGTACAGAGAGGCCT
TGGCTAAGTTTAACCACGACAGACGGCTGTGGAGCAACTGGATCAAGTTC
AGCAGGAAGTCAAATCCTGTCGAGGTGGCGGGCATATACGAGAAGATGCT
GCTGTACCATGGCGACTCGCCGGATCTTTGGGTGGACGCCGCCTTATGGC
TGTACGAGTTCAATCGGCTCAACATCGATCGAGTCAAGGACATCCTGCTG
CGTGGCTTGCAGAGACATCCGGATTCCGAGGCACTTAACAAGTGCTTCTT
TGACATTATGCTGAAAGAGGCTGCCCTGGCCAGCAACGAACGCAATTTAG
CCGAGAATACGCTCTCGGAACAGGACATCAAATTGGAACGCGTGGAGGCG
GTCTACCGCAACAGCATGGCCAATATTACCCAATTGGACTACTTTGTTAA
GCTTCTAGAAAGCTGTGAGGATCATCAGGAGCTGACGGGCAAGCTGCAGC
GAATGATAATCGATGATATGCAAGAGAAGTTCCCCCGGGAGCCGGGCCTG
TGGGATTTGCTTGCCCAGCGAGAGTTGCGCGGCTTTCATCTGGGCGACCT
GAGGAGGAGGACTTGGATACCAGTGACGAGAGCCGGCCAGCAAGAAATCT
CGTTCCGTAATGGTCCGCTCTCTCAGCGACGCATTCAACTCTGCGTTACT
GTATACAAATCGGCGGTGGAAGGACTGCAACGACAGAATGTGAATATGTA
TTTGGATGCCATGCTGGACTCAAAGATGCAAGACGGGAGCGTATCTA
UFO05808.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7246-RA | 2043 | CG7246-RA | 111..1132 | 9..1023 | 4845 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9079812..9080435 | 1017..400 | 2715 | 97.9 | Minus |
| X | 23542271 | X | 9080495..9080801 | 404..98 | 1535 | 100 | Minus |
| X | 23542271 | X | 9080856..9080947 | 100..9 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:15:24 has no hits.
UFO05808.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:33:36 Download gff for
UFO05808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 89..1121 | 2..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:34 Download gff for
UFO05808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 104..1136 | 2..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:52 Download gff for
UFO05808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7246-RA | 104..1136 | 2..1029 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:52 Download gff for
UFO05808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9079801..9080430 | 405..1029 | 97 | <- | Minus |
| X | 9080495..9080798 | 101..404 | 100 | <- | Minus |
| X | 9080856..9080954 | 2..100 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:34 Download gff for
UFO05808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8973834..8974463 | 405..1029 | 97 | <- | Minus |
| arm_X | 8974528..8974831 | 101..404 | 100 | <- | Minus |
| arm_X | 8974889..8974987 | 2..100 | 96 | | Minus |
