UFO05811.5prime Sequence
907 bp (798 high quality bases) assembled on 2009-07-20
> UFO05811.5prime
CAGTCGACATGCGTACGTTCACCTTGATCTTGGGACTATTGTGCAGCTTG
GGATACTCAAGTGGATACAATTACCTGATGGTTCTGAATTCCGCCGGTCG
TTCCCACTTTAATGTGGGACACGCTTTGGCCAAGGGATTGGTCAAGGCTG
GGCATACAATCACCGTAGTGTCCGTCTTTCCTCAGAAAAAACCCATTCCT
GGTTATACTGATGTAAGTGTGCCAAATGTGATCGAAGTCATGGGAGGAGA
CATTGGAGCCTTGTGGGCATCTATCCAAAAGACATATACTCAGAATCTCA
TCGATCATTATCAAATGGGATTTCGCATCACCAGAGGCCTTTTCGAGGAC
TCCAATTTCCAGGATTTTCTGAAGAGCAACCAAAGCTTTGATGCGATCAT
ATGTGAGACTTTCTACAATGATGCCCACTATGGCTTGGCAGAGCATTTTA
ATGCTCCACTGATTGGATTGGCCACCGGTGGAGGTCTGACATTTATCACA
GATATGGTTGGTTCCCCCGCTCCAGCTTCGTTCGTGCCCCACATAATGCT
ACCCTTTAACGATCACATGTCGCTGTACGAACGCCTTTTGAACGTGGCTT
TTCTTGGCTATGAAAGAGTTCTACTGGACTACTATTTCTTACCGACTCAG
GAGAAGTTATACAAGGAGTTCTTTCCGGGCAACAAGAGGTGTTTCTATAA
GATGCGCCGAAATGCCTCCTTGGTGCTCATCAATCAACATGTTTCACTAA
GTTTTCCGCGACTGCACTCACATGTGTGTGTGTCCGATGACTCAAACAAT
TAGCATGCTATCGCACACGTCTAGCACATAGCACGCGTCGATCACATCTC
GCAGTGCTGTGCGTGCGTGCTGTTAGAGTACTGACAGCCATCTCGACTGG
CCGCACC
UFO05811.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ugt86Di-RB | 2556 | CG6658-RB | 53..816 | 8..771 | 3805 | 99.9 | Plus |
| Ugt86Di-RA | 1675 | CG6658-RA | 53..816 | 8..771 | 3805 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11153232..11153495 | 508..245 | 1320 | 100 | Minus |
| 3R | 32079331 | 3R | 11152766..11153031 | 771..506 | 1315 | 99.6 | Minus |
| 3R | 32079331 | 3R | 11153558..11153797 | 247..8 | 1200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:05:55 has no hits.
UFO05811.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:33:26 Download gff for
UFO05811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt86Di-RA | 1..763 | 9..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:00 Download gff for
UFO05811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt86Di-RA | 47..816 | 1..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:53 Download gff for
UFO05811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ugt86Di-RA | 47..816 | 1..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:53 Download gff for
UFO05811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11153559..11153803 | 1..246 | 98 | | Minus |
| 3R | 11153234..11153493 | 247..506 | 100 | <- | Minus |
| 3R | 11152766..11153030 | 507..771 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:00 Download gff for
UFO05811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6978488..6978752 | 507..771 | 99 | <- | Minus |
| arm_3R | 6978956..6979215 | 247..506 | 100 | <- | Minus |
| arm_3R | 6979281..6979525 | 1..246 | 98 | | Minus |
