UFO05812.5prime Sequence
1038 bp (922 high quality bases) assembled on 2009-07-20
> UFO05812.5prime
CAGTCGACATGCTGCCACTGGTGCTATTTATCCTATTGGCCGCCACGCTC
CTGTTTTGGAAATGGCAGGGCAATCACTGGCGTCGCCTGGGACTGGAGGC
ACCTTTTGGCTGGCCATTGGTTGGGAATATGTTGGACTTTGCCCTGGGCC
GCCGCTCATATGGAGAGATTTACCAGGAAATCTATACTCGGAATCCGGGC
CTGAAATATGTGGGTTTCTATCGCCTGTTTAACGAACCCGCCATTCTGGT
GCGTGACCAGGAGTTGCTGCGCCAGATCCTGGTGGGCCGTAACTTTGCCG
ACTGTGCGGACAACGCCGTTTATGTGGACCACCAGCGCGATGTCCTGGCT
AGCCACAATCCCTTCATCGCCAACGGAGACCGCTGGCGAGTCTTGCGGGC
CGACCTGGTGCCGCTCTTCACACCCAGCCGAGTGCGTCAGACCTTGCCGC
ATGTGGCCAGAGCATGTCAGTTGCTCCGGGATCAGGTGCCCCTTGGACGC
TTCGAGGCCAAGGACTTGGCCACGCGTTATACGCTACAAGTGGTTGCCTC
CGCGATCTTCGGTCTGGATGCACATTGCCTGGGGATTCACATGAGGGTGG
CTCATGAACCAAGTCGCTGGCTGGAATGGCTCGCTCCGCTCTTTCAGCCA
AGCGTTTGGAGTTTGCTGGAGACCATGTCACTGTTGCACACGCCTCGATT
GGGTAGACTCATTGGCCACCGATACGTACCCCTGCCCCTGCAGCACTGGT
TCAGGAATTGGTGGAAGCCCGAAGTGGTGGCGACAACCTCTTGCAATGGC
TGGCGGAAAGCAAAGAGGCTTGGGAAAGGAGGAGCTAGCTGGACATGCCA
CCACTCTCCTACTGGAGGGCTACGAAACCTCGGCGATGCTACTCGCCTTC
GCCCTCTACGAATTGGCCTCATGAGATGCACAGCGACGTACCCATCGAAT
TGATGAGTGACCACGCCACCTGGCAATCTGATGTATCCATGGCTCTGGGT
GACTCGCTATAGGAACTGCGCCTCTGGAGGCCTGCTCT
UFO05812.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp308a1-RA | 1596 | CG6585-RA | 31..1070 | 9..1031 | 4680 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18710134..18710667 | 188..721 | 2670 | 100 | Plus |
| X | 23542271 | X | 18710724..18710923 | 721..918 | 900 | 99 | Plus |
| X | 23542271 | X | 18709895..18710073 | 9..187 | 895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:14:45 has no hits.
UFO05812.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:33:27 Download gff for
UFO05812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp308a1-RA | 23..1063 | 1..1025 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:23 Download gff for
UFO05812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp308a1-RA | 23..1063 | 1..1025 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:27 Download gff for
UFO05812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp308a1-RA | 23..1063 | 1..1025 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:27 Download gff for
UFO05812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18709887..18710073 | 1..187 | 98 | -> | Plus |
| X | 18710134..18710667 | 188..721 | 100 | -> | Plus |
| X | 18710725..18711044 | 722..1025 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:23 Download gff for
UFO05812.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18603920..18604106 | 1..187 | 98 | -> | Plus |
| arm_X | 18604167..18604700 | 188..721 | 100 | -> | Plus |
| arm_X | 18604758..18605077 | 722..1025 | 93 | | Plus |
