UFO05813.5prime Sequence
1117 bp (1015 high quality bases) assembled on 2009-07-20
> UFO05813.5prime
CAGTCGACATGTTTGGATCGCTTCTACTGGGGATTGCCACCTTGCTGGGC
GCGATCTATGCCTTTCTGGTCTCGAACTTTGGCCACTGGCGGCGTCGCGG
AGTCACAGAACCCAGAGCCCTGCCGCTCTTCGGTTCCTTTCCCAACATGA
TTTGGCCACGCCAGCACTTCACCATGGACATGCGCGATATCTATATGCAT
TACAGGAATACCCATAGCTATGTGGGCTGCTACCTGTTGCGTGCACCCAA
GCTGCTCGTCCTGGAACCACGCCTTGTGTACGAGATCTATGTGAGCGCGT
TCAGTCATTTCGAGAACAACGATGCCTCCAAGATGGTGGACATCGCCAAG
GATCGTTTGGTCGCCCTCAATCCATTCGTGCTCGAGGGCGAAGAGTGGCG
CCACCAGCGGGCGGTCTTCTCCACTCTGCTGACCAACGGTCGCATCCGCA
CCACCCATGCCATCATGCAGCGTGTCTGTCTGGATCTCTGTCAGTTCATT
GCGATAAAGTCGGCTGGAGGCAAGGATCTGGACTGCATTGATCTGGGTCT
TCGCTTCACGGGTGAATCGCTGTTTGACTGCGTCCTGGGCATCCAAGCGC
GCACCTTCACCGACAATCCACTGCCGGTTGTGCGGCAAAACCACGAGATG
TCCGCCGAGAATCGCGGATTGGCCATTGCCGGCGCCGTCCATGGCCTCTT
CCCGAATCTTCCGCGCTGGCTGCGTCCCAAGGTCTTTCCCCGTTCCCACG
ATCGATTCTACGGCCAGATGATTAGCGAAGCTCTGCGCCTGCGTCGTTCC
AAGCACCAGGAACGCAACGACTTCATCAACCATCTGCTCGAGATGCAGAG
GGAACTGGATCTCAGCGAGGAGGACATGGCCTCGCATGCCATGACCTTCA
TGTTCGACGGCCTGGACACCACCTCCAATAGCATTGCCCATTGTCTTCTG
CTGCTTGGTCGTAATCCAGATTGCCAGGCGGCGTTTGTACGAGGAACTCC
AGCTGGTCAATCCCGGTGGTTATCTGCCCGATCTGGAGGCACTGATAGAT
CTGCCCTATCTGAGGCTGCTTTAATGAAGCCTAAGAAATTATCCGGCGGC
GCGGCACCAAGAACCTG
UFO05813.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp28c1-RB | 1665 | CG1895-RB | 2..1093 | 8..1097 | 5290 | 99.2 | Plus |
| Cyp28c1-RA | 1543 | CG1895-RA | 2..1093 | 8..1097 | 5290 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11840262..11840672 | 543..953 | 2055 | 100 | Plus |
| X | 23542271 | X | 11839858..11840203 | 197..542 | 1730 | 100 | Plus |
| X | 23542271 | X | 11839604..11839798 | 3..197 | 960 | 99.5 | Plus |
| X | 23542271 | X | 11840726..11840836 | 953..1064 | 480 | 97.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:38:47 has no hits.
UFO05813.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:33:38 Download gff for
UFO05813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28c1-RA | 1..1096 | 9..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:09 Download gff for
UFO05813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28c1-RA | 2..1098 | 8..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:47 Download gff for
UFO05813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28c1-RA | 2..1098 | 8..1101 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:47 Download gff for
UFO05813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11840727..11840850 | 954..1076 | 96 | | Plus |
| X | 11839603..11839797 | 1..196 | 98 | -> | Plus |
| X | 11839858..11840203 | 197..542 | 100 | -> | Plus |
| X | 11840262..11840672 | 543..953 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:09 Download gff for
UFO05813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11733636..11733830 | 1..196 | 98 | -> | Plus |
| arm_X | 11733891..11734236 | 197..542 | 100 | -> | Plus |
| arm_X | 11734295..11734705 | 543..953 | 100 | -> | Plus |
| arm_X | 11734760..11734883 | 954..1076 | 96 | | Plus |
