UFO05816.5prime Sequence
1116 bp (1024 high quality bases) assembled on 2009-07-20
> UFO05816.5prime
CAGTCGACATGGCGACGAAAACAAATACCATCGAGCGCAACGGCCACTCG
GCCAAAAGCTCCACACTACGGGAAATTTGCGCGCGCGCCATCACAAAATC
GGAGTGGGAGGACAAGGAAGAGTTCCTGGACGTTATCTACTGGTCACGCC
AGGTATTCGGCATCTTTCTGGGCGTCATCTGGGGCATTGTTCCGCTGAAG
GGCTTTCTGGGCCTCGTACTATTCGCCGGCATCAGCTGCGGGATCGTCTA
CCTGTACGCCATAAACTTTCAGAACGTGGACGAGGACGCCTACGGAGGGG
TATGGGAGCTGATCAAGGAGGGGTTCATGACGTCGTTTGCCGGATTCCTG
GTCACGTGGATCATCTTCTACACGGGCCTGCACTACGACGCCATAATGGC
GGCGAAAGGATCTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTA
CGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTC
TGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGC
GGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAAC
GGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGA
AACTCACCCAGGGATTGGCTGAGACGAAAACATATCTCAATAAACCCTTT
AGGGAAATAGGCCAGGTTTCACCGTACACGCCACATCTTGCGAATATATG
TGTAGAACTGCCGAAATCGTCGTGTATTCACTCCAGAGCGATGAAACGTT
CAGTTGCTCCATGGAAACGGTGTAACAGTGAACACTATTCCCAAATCACC
AGCTCACGTCTTCATGCATACGAATCGGAGAACATTCATCAGCGGCAGAT
GGATAGCAGATAACTT
UFO05816.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12107-RA | 782 | CG12107-RA | 103..507 | 9..413 | 2010 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7674895..7675087 | 221..413 | 950 | 99.5 | Plus |
| 2R | 25286936 | 2R | 7674552..7674660 | 9..117 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 7674719..7674824 | 115..220 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:08 has no hits.
UFO05816.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:33:39 Download gff for
UFO05816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12107-RA | 96..507 | 2..417 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:11 Download gff for
UFO05816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12107-RA | 99..510 | 2..417 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:00 Download gff for
UFO05816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12107-RA | 99..510 | 2..417 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:00 Download gff for
UFO05816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7674548..7674659 | 2..116 | 96 | -> | Plus |
| 2R | 7674721..7674824 | 117..220 | 100 | -> | Plus |
| 2R | 7674895..7675087 | 221..413 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:11 Download gff for
UFO05816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3562053..3562164 | 2..116 | 96 | -> | Plus |
| arm_2R | 3562226..3562329 | 117..220 | 100 | -> | Plus |
| arm_2R | 3562400..3562592 | 221..413 | 99 | == | Plus |
