UFO05817.5prime Sequence
1089 bp (995 high quality bases) assembled on 2009-07-20
> UFO05817.5prime
CAGTCGACATGTCGCCGTTCATGGAGAAGACGTTGTTGTTGTTAGGCGTG
CTCTGCTGCATACAAGTGACCACTGCCCTGATGTGCTACGACTGCAACAG
CGAGTTCGATCCCCGCTGCGGCGATCCCTTCGAGCCGTACTCCATTGGCG
AGGTGAACTGCAGCAAACAGGAGCCTCTGGAGCATCTGAAGGACAAATAC
AAGCCCACCCTGTGCCGCAAAACCGTGCAAAAGATTTACGGGAAGACCCG
GATTGTGCGTGGATGCGGATACATCCCAGACGAAAACACCGACAACAAGT
GCGTGAGACGCTCGGGAACCCACGACGTGGCCGCCATCTACTGCTCCTGC
ACCAAGGATCTGTGCAACGGGGCCAACTCGCCTGCTGGCCAGTGGATGAT
GCTGCCCCTCATTGTGGCCGCCGGATTGGCGCTCCTGCTGAACTCGAGGC
ACACAATACGATTCCAGAGCTCGGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
ATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCAT
GGTGAAAACGGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAAATCAAA
ACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATCTCATA
AACCCTTTAGGAAATAGGCCAGGTTTCACGTAACACGCCACATCTTGCGA
ATATATGTTGTAGAAACTGCAGAAATAGTCTTGTATTCCTCCAAAGCGAT
GAAAACGTTTCAGTTGCTCATGAAAAGTGTAACAAGGGT
UFO05817.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6329-RF | 1108 | CG6329-RF | 301..765 | 9..473 | 2325 | 100 | Plus |
| CG6329-RE | 3335 | CG6329-RE | 384..848 | 9..473 | 2325 | 100 | Plus |
| CG6329-RD | 1061 | CG6329-RD | 254..718 | 9..473 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13830778..13831016 | 235..473 | 1195 | 100 | Plus |
| 2R | 25286936 | 2R | 13830549..13830718 | 65..234 | 850 | 100 | Plus |
| 2R | 25286936 | 2R | 13829808..13829865 | 9..66 | 290 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:49:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2208..2277 | 305..376 | 111 | 65.3 | Plus |
UFO05817.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:33:41 Download gff for
UFO05817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6329-RB | 497..975 | 1..481 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:29 Download gff for
UFO05817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6329-RD | 246..724 | 1..481 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:08 Download gff for
UFO05817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6329-RD | 246..724 | 1..481 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:08 Download gff for
UFO05817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13829800..13829865 | 1..66 | 93 | -> | Plus |
| 2R | 13830551..13830718 | 67..234 | 100 | -> | Plus |
| 2R | 13830778..13831016 | 235..473 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:29 Download gff for
UFO05817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9717305..9717370 | 1..66 | 93 | -> | Plus |
| arm_2R | 9718056..9718223 | 67..234 | 100 | -> | Plus |
| arm_2R | 9718283..9718521 | 235..473 | 100 | == | Plus |
