UFO05819.5prime Sequence
1119 bp (1011 high quality bases) assembled on 2009-07-20
> UFO05819.5prime
CAGTCGACATGAATCGTAGGGGTTTGAACGCTGGCAATACGATGACTTCT
CAAGCGAACATTGACGACGGCAGCTGGAAGGCGGTCTCCGAGGGCGGATC
AATGCTGCCCGCGTCCAATTCGGCGGTCCTCAATCCGGACGGGAGCAACC
AGAGCGGCTTCGCGCAGGGCGGCCTGCCGTACAACTCGGCCGGGAATCCG
TACCCGCCCGCCGGCCAATCCTCGCCAGCCGGCAACCAGTCCATCGTGTT
CCAGAACTCCAACCAGCCTGGCTCGAACACACCTCAGTATACCTCCTCAC
CTGCTCCCTCGGGCTCATCGACACCCGGACCTGTTGGTGCGCAGAACATT
CCCGGCAACTACCCGCAGTCGGCGACGGCGGGCAATTTCAATGGTCCAGT
TGGCGGGCCCTTCGGCTCGCCATCCTCGGGACTCGGCCAGTTCAGCCGGC
CGGCCAGCTCGGGCACTCCGTTTAACAGTGGCCAGGCCGGGCACTTCTCA
TCGCCCACGGTATTCAGCGTTGGCGGGCAATTCAATCCGATGCCGCCGGC
GTCGCCATTCGGCCACGGAGGCAACCACCCGATGATGGGCGGGCCGCAGC
AGATGGAACGCATCGACCAGGGCTTCAGGCGGCACAATTCCTACTTTAGC
CACACGGAACACCGCGTCTTTGAGCTAAACAAGCGGCTGCAGCAGCGCAA
CGAGGAGAGCGACAACTGCTGGTGGGACTCGTTTACCACGGAGTTCTTCG
AGGATGATGCCCGGCTGACCATTCTGTTCTGCCTGGAGGACGGACCGAAG
CGGTACACCATCGGGCGCACGCTCATCCCGCGCTTCTTCCGCAGCATATA
CGAGGGCGGCGTTTCGGACCTGTACTTTCAGCTGAAGCATGCCAAGGAGT
CGTTCCACACACGTCCATCACGTTGGACTGCGACCAGTGCACGGTGATCA
CGCAGCACGGCAAGCCCTCCTTCACGAAGTCTGCGCCGACGCAAGACTGA
TCTTGGGAGTTCTTGTACGACGACTACTTGCGCATCAAGTCATGGTCCAT
GACCCTCAGGAAACCGCGAGCTCATCCAAGGTCCGGGGATCGGGACCAGT
CTGCCGCCTGACCCGAATG
UFO05819.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chi-RB | 2125 | CG3924-RB | 125..1236 | 8..1116 | 5270 | 98.6 | Plus |
| Chi-RA | 2156 | CG3924-RA | 156..1267 | 8..1116 | 5270 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24032427..24033538 | 1116..8 | 5125 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:25:54 has no hits.
UFO05819.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:33:43 Download gff for
UFO05819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RB | 121..1238 | 1..1119 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:56 Download gff for
UFO05819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RA | 152..1269 | 1..1119 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:54 Download gff for
UFO05819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chi-RA | 152..1269 | 1..1119 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:54 Download gff for
UFO05819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24032425..24033542 | 1..1119 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:56 Download gff for
UFO05819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19919948..19921065 | 1..1119 | 98 | | Minus |
