UFO05820.5prime Sequence
1095 bp (996 high quality bases) assembled on 2009-07-20
> UFO05820.5prime
CAGTCGACATGCAGGCGATCAAGTGCGTCGTCGTGGGCGACGGAGCCGTG
GGAAAGACCTGCCTGCTGATCAGCTACACGACCAATGCCTTTCCCGGCGA
GTACATACCCACCGTGTTCGACAACTACTCGGCCAACGTGATGGTGGACG
CCAAGCCCATCAACCTGGGCCTGTGGGATACGGCCGGGCAGGAGGACTAC
GACCGACTGAGGCCACTGTCTTATCCCCAGACCGATGTCTTCCTCATCTG
CTTCTCGCTGGTGAATCCGGCATCGTTCGAGAACGTGCGGGCCAAGTGGT
ATCCGGAGGTGCGCCACCACTGCCCCAGCACGCCCATCATCCTGGTGGGC
ACCAAGCTGGATTTGCGCGACGACAAGAACACAATCGAAAAGCTGAGGGA
CAAGAAACTGGCGCCCATCACCTATCCGCAGGGCCTGGCCATGGCCAAGG
AAATCGGAGCGGTCAAGTATCTGGAGTGCTCGGCCCTGACGCAGAAGGGT
CTGAAAACCGTTTTCGACGAGGCCATCCGGTCGGTTTTGTGCCCCGTGCT
GCAGCCCAAGTCCAAGCGCAAGTGCGCCCTGCTCGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACT
GTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCA
TGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGGCCTTGCGTAT
ATATTTGCCCATGGTGAAAACGGGGGCGAAGAAATTGTTCATATTGGCCA
CGTTTAATTCAAACTGGGTGAAACTCACCCAGGATGGCTGAAACGAAAAC
ATATTTCTCATACCCGTAGTAATAGCAGTTCCCGTACCGCCCATT
UFO05820.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rac1-RB | 1805 | CG2248-RB | 337..913 | 8..584 | 2885 | 100 | Plus |
| Rac1-RA | 1718 | CG2248-RA | 337..913 | 8..584 | 2885 | 100 | Plus |
| Rac2-RB | 2429 | CG8556-RB | 680..1198 | 8..526 | 1545 | 86.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1301771..1302347 | 584..8 | 2885 | 100 | Minus |
| 3L | 28110227 | 3L | 7433993..7434511 | 526..8 | 1545 | 86.5 | Minus |
| X | 23542271 | X | 19697956..19698235 | 7..286 | 455 | 77.5 | Plus |
| X | 23542271 | X | 19698352..19698538 | 342..528 | 230 | 74.9 | Plus |
| 3R | 32079331 | 3R | 27638122..27638297 | 165..340 | 220 | 75 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:15 has no hits.
UFO05820.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:33:44 Download gff for
UFO05820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rac1-RA | 328..916 | 1..588 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:15 Download gff for
UFO05820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rac1-RA | 328..916 | 1..588 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:03 Download gff for
UFO05820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rac1-RA | 328..916 | 1..588 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:03 Download gff for
UFO05820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1301767..1302354 | 1..588 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:15 Download gff for
UFO05820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1301767..1302354 | 1..588 | 98 | | Minus |
