UFO05826.5prime Sequence
1086 bp (993 high quality bases) assembled on 2009-07-20
> UFO05826.5prime
CAGTCGACATGGTCGAGACCGTTGTCAATATCGAGCGCACAACAACAACA
ACGACGAACGGACCGCCAGGTGGAGCGAACCCGACCGTTGGCAGCGGTGG
CGGCTTCTGGAGCGCCATTCGCCTCAACATCGACTATTTCCGCACCATAC
CGGGCATCATCAAAATTGTGGAGTTTGTGCTGGGCATCATCTGCATGGCC
CTGGCAGCTCCTCCACTGGCCTCGGCCACCTCGTTCTTCATGTTCGTCAT
CGTCATCTCGTTCATCATCAACATTCTGCTGATCGCCGCCTATTTCCTGG
GCATTCGCGAGGCCCTCAACGTGGCCGTCAACTGGATATTCTCGGAGCTG
ATCACCACCGCTGTGCTGACGCTGCTGTACTTCATCGGATTCATCGTCCA
GCTGGCCAGATGGTCGGATGCCACGGGCAAGGGTTCCGGTTCGAATACCG
CCGCCGGTGTCTTTGGACTCTTCAATTTCCTGGCATACGCGGCGGGCACG
TACTTCCTGTTCCTGGCCCACAGGTCCGGGGCTACCCACGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAA
CGGCATGATGAACCTGATCGCCAGCGGCATCAGCACCTTGTCGCTTGCGT
ATATATTTGCCATGGTGAAACGGGGCGAAGAAGTTGTCCATATTGGCACG
TTTAAATCAAAACTGTGAACTCACCCAGGATTGCTGAACGAAAACATATC
TCATAACCTTTAGAGTAGCCAGTTCACGTAACACGCCAATCTGCAATATA
TGGTGACTGCGATCGTCTGATCATCACATGAACGTC
UFO05826.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15211-RE | 1135 | CG15211-RE | 232..762 | 9..539 | 2640 | 99.8 | Plus |
| CG15211-RD | 1136 | CG15211-RD | 233..763 | 9..539 | 2640 | 99.8 | Plus |
| CG15211-RC | 1197 | CG15211-RC | 294..824 | 9..539 | 2640 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10778210..10778405 | 344..539 | 965 | 99.5 | Plus |
| X | 23542271 | X | 10772999..10773169 | 9..179 | 855 | 100 | Plus |
| X | 23542271 | X | 10777961..10778129 | 177..345 | 845 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:22 has no hits.
UFO05826.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:33:55 Download gff for
UFO05826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15211-RA | 278..819 | 1..544 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:18 Download gff for
UFO05826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15211-RC | 287..828 | 1..544 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:07 Download gff for
UFO05826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15211-RC | 287..828 | 1..544 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:07 Download gff for
UFO05826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10777961..10778128 | 177..344 | 100 | -> | Plus |
| X | 10778211..10778405 | 345..539 | 99 | == | Plus |
| X | 10772992..10773166 | 1..176 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:18 Download gff for
UFO05826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10671994..10672161 | 177..344 | 100 | -> | Plus |
| arm_X | 10667025..10667199 | 1..176 | 97 | -> | Plus |
| arm_X | 10672244..10672438 | 345..539 | 99 | == | Plus |
