UFO05827.5prime Sequence
1141 bp (1029 high quality bases) assembled on 2009-07-20
> UFO05827.5prime
CAGTCGACATGCCGACAAAGGCGGTTTTCCCCACCTTCTTCAACAAGGAG
ACCCAGGTCTGGAGTGGCCCGCCACGGCCCACGGTCTACGACCACAACAC
CTCGGTCGGTCAGATCGTGTTCAACTCCCTGAGGTGCTGGCCCACCAATG
TGATTCAGATCACCGACGACGACGGCACCGTGCTGACCAACGCCGACATG
CTGGCCTACGCCACCCGGATTGCCCTATTCTTTAAGAGCGAGGGCTTGAC
CCAGGAGGACCGCGTCGGGATCATCGCCAACTCGAGCACCTTCGTGATCC
CCGTGGCCACCGCCTGCTTCTTCCAGGCCACGCCCTTCCACGCCGTCAAC
TACTCCAGGGAGCCGGCCATCGTACAGGGTCTCTACTCGGTGACCAAACC
CAAGATCATGTTCATCGACGGTCCGGACTACGACCGCATCAAGGAGATCA
CCAAGGAGTGGTCTCCCAAGCTGATCACGCTCACGGGTAAAGTGGAGGGC
GTTACTAGCATCGAGGACCTCGTAAAGCCCCATCCCGCCGAGAAGATCTA
TGTACCTGCTTCCCTGGCCACTGGTGGCGACCAGATCGCCGTGGTCCTGT
GCTCCTCCGGCACTGCTGGCTTGCCCAAGGCAGTTGCCCTCTCCCACCGC
CACATTGCATCCACCAACTCGCTGTGCATCAGTACCGATGTGCTGTACAC
CAGTGCCACCATCGACTGGATGACCGGATTCTCGATTACCGTAATGAATC
TCACATGTGGCTTCACTCGCATCATATCCAGGAGGACATTTAGCGCCGAG
ACGGCTCTCTACCTGGTCAGCAAGTACAAGGTCACCTGCCTGGCAATGGC
GCCATGGCAGGCCTACGAGCTCTTCACCAGTCCACTGGCCACCAGCGAGC
AACTGGAGTCCCTGAAGATAGCCTTCGTGATTGGAGGATGGATATCCCTG
GCACTACTGCGGCGGGCCCAGGAGCTGCTGCCCAAGACCTACGTGATGTT
CCTCGTACGGAACCACGGAGACGGGAGTGGTGACCATCAACATCGACCAA
GTCTGGAGTGCTCTGTAGCGACTGCGCCCGCATGAAGATCAAAATCCAGG
CGAGAATGGCAGCACTGGCGGAATCAAACGGCGAGGTGTTC
UFO05827.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4563-RA | 1766 | CG4563-RA | 36..1175 | 9..1138 | 5345 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24452394..24452790 | 553..157 | 1985 | 100 | Minus |
| 2R | 25286936 | 2R | 24451755..24452152 | 1068..671 | 1895 | 99.5 | Minus |
| 2R | 25286936 | 2R | 24452856..24453005 | 158..9 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 24452210..24452327 | 671..554 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:01:27 has no hits.
UFO05827.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:33:56 Download gff for
UFO05827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-RA | 25..1120 | 1..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:51 Download gff for
UFO05827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-RA | 28..1123 | 1..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:32 Download gff for
UFO05827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4563-RA | 28..1123 | 1..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:32 Download gff for
UFO05827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24451727..24452152 | 671..1092 | 98 | <- | Minus |
| 2R | 24452211..24452327 | 554..670 | 100 | <- | Minus |
| 2R | 24452394..24452788 | 159..553 | 100 | <- | Minus |
| 2R | 24452856..24453011 | 1..158 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:51 Download gff for
UFO05827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20339250..20339675 | 671..1092 | 98 | <- | Minus |
| arm_2R | 20339734..20339850 | 554..670 | 100 | <- | Minus |
| arm_2R | 20339917..20340311 | 159..553 | 100 | <- | Minus |
| arm_2R | 20340379..20340534 | 1..158 | 97 | | Minus |
