UFO05831.5prime Sequence
1065 bp (987 high quality bases) assembled on 2009-07-20
> UFO05831.5prime
CAGTCGACATGTGCGCCTCCCCGTCCACGGCTCCCGGCTTCTTCAATCCG
CGCCCGCAATCCGGCGCGGAGCTGTCGGCCTTCGACATCGGCCTGTCCCG
CTCGATGGGGCTGGGCGTCCCGCCACACAGCGCCTGGCACGAACCGCCGG
CCTCCCTCGGCGGTCACCTGCACGCCGCCTCCGCCGGACCGGGCACCACC
ACCGGCAGCGTGGCGACGGGCGGCGGCGGTACCACTCCGAGCAGCGTGGC
CAGCCAGCAGTCGGCGGTGATCAAGCAGGATCTCTCTTGCCCCAGCCTCA
ATCAGGCGGGATCCGGCCATCATCCTGGCATCAAGGAGGATCTGTCCAGC
AGCCTGCCCAGCGCCAATGGTGGATCCGCCGGTGGCCATCACTCCGGTTC
CGGATCGGGTTCCGGTTCGGGCGTCAATCCCGGACACGGCTCCGACATGC
TGCCCCTGATCAAGGGCCATGGCCAGGACATGCTCACCAGCATCAAGGGA
CAGCCCACGGGCTGTGGCAGCACCACGCCCAGCTCCCAGGCGAATAGCTC
CCACTCGCAGAGCAGCAACAGTGGATCCCAGATCGACAGCAAGCAGAACA
TCGAGTGCGTCGTCTACGGCGACAAGAGTTCCGGCAAGCACTACGGACAA
TTTACCTGCGAAGGTTGCAAATCTTTCTTCAAGCGCTCGGTGCGACGTAA
TCTAACTTACTCTTGCCGCGGCAGCAGAAACTGTCCCATAGATCAACACC
ATCGCAATCAATGTCAATATTGTCGATTGAAGAAGTGCCTCAAAATGGGC
ATGAGACGCGAAGCTGTTCAACGTGGACGCGTACCACCCACTCAGCCCGG
TCTGGCCGGCATGCATGGGCAGTACCAGATTGCCAACGGGGATCCCATGG
GCATTGCCGGCTTTAACGGGCACTCGTACCTCAGTTCCTACATCTCGCTC
CTGCTGCGGGCGGAACCGTATCCGACTTCGCGATATGGGCAGTGCATGCA
ACCCACAAACATTATGGCATCGACAACATCTTGCGAACTGACCGCCGACT
GATGTCCGGCGGTCG
UFO05831.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| svp-RE | 3859 | CG11502-RE | 443..1487 | 8..1051 | 5080 | 99.2 | Plus |
| svp-RB | 3859 | CG11502-RB | 443..1487 | 8..1051 | 5080 | 99.2 | Plus |
| svp-RA | 3421 | CG11502-RA | 485..1529 | 8..1051 | 5080 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12281594..12282251 | 8..665 | 3275 | 99.8 | Plus |
| 3R | 32079331 | 3R | 12294006..12294240 | 812..1046 | 1020 | 97.5 | Plus |
| 3R | 32079331 | 3R | 12290207..12290358 | 662..813 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:09:19 has no hits.
UFO05831.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:33:57 Download gff for
UFO05831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svp-RB | 437..1487 | 1..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:45 Download gff for
UFO05831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svp-RA | 479..1529 | 1..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:00 Download gff for
UFO05831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svp-RA | 479..1529 | 1..1051 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:00 Download gff for
UFO05831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12290209..12290358 | 664..813 | 100 | -> | Plus |
| 3R | 12281588..12282249 | 1..663 | 99 | -> | Plus |
| 3R | 12294008..12294246 | 814..1051 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:45 Download gff for
UFO05831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8107310..8107971 | 1..663 | 99 | -> | Plus |
| arm_3R | 8115931..8116080 | 664..813 | 100 | -> | Plus |
| arm_3R | 8119730..8119968 | 814..1051 | 97 | | Plus |
